KEGG   Gallus gallus (chicken): 418064
Entry
418064            CDS       T01006                                 
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
gga  Gallus gallus (chicken)
Brite
KEGG Orthology (KO) [BR:gga00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gga03016]
    418064 (RTCB)
Enzymes [BR:gga01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     418064 (RTCB)
Transfer RNA biogenesis [BR:gga03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    418064 (RTCB)
 Prokaryotic type
   tRNA splicing ligases
    418064 (RTCB)
SSDB
Motif
Pfam: RtcB Cu-oxidase_4
Other DBs
NCBI-GeneID: 418064
NCBI-ProteinID: XP_416300
CGNC: 9570
Ensembl: ENSGALG00000012611
UniProt: F1NYI3
Position
1:53286595..53300334
AA seq 505 aa
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagccgcagctacaacgatgagctccagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcacgtggagggcgttttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggcggaggtgcgggt
ggttttttgcctgctatgaaacagattgggaatgtggctgcattgcctggaattgttcat
agatccataggcctgccagatgtccactctggctacggctttgccattggcaacatggca
gcctttgatatgaatgatcctgaagcagtggtgtcaccaggtggtgtcggatttgacatc
aactgcggtgtccgcttactgcgtacaaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaggctatgtttgaccacattcctgtcggtgtcggttcaaagggtgtc
atccccatgaatgccaaggatttggaagaggctctagagatgggtgtagactggtctctc
cgggaaggctatgcctgggcagaggacaaggaacactgtgaggaatatggaagaatgttg
caggctgatcccaacaaagtctcttcgagagcaaagaagaggggcctgcctcagctgggg
accctgggagcaggaaatcattatgctgagatccaggttgtggatgacatttacaatgaa
tatgctgccaggaagatgggcatcgaccacaaaggacaggtttgcgtcatgatccatagc
ggcagcagaggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcgccagctagcgtgtgccaggattgcctct
gtggagggacaggattatttgaagggaatggcagccgctggaaactatgcgtgggtcaac
cgttcttccatgacctttctaacaagacaggcttttgccaaagtctttaacacaacccca
gatgacctcgatatgcatgttatctatgatgtgtctcacaacattgccaaagtggagcaa
cacgtagtggatgggaaggaacggactctactggtgcacagaaaaggatcaaccagagcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcctgttctg
attggtggaactatgggcacgtgtagctatgttcttactggcacagagcaaggcatgact
gagacgttcggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcctataagaatgtgacagat
gtcgttaatacctgccatgcagctggcatcagcaagaaagcaattaagttgagacctatt
gctgttataaaaggctag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (2)   
   Pfam (2)   
All databases (35)   

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