KEGG   Gallus gallus (chicken): 423718
Entry
423718            CDS       T01006                                 
Symbol
CDH23
Name
(RefSeq) cadherin-23 isoform X8
  KO
K06813  cadherin 23
Organism
gga  Gallus gallus (chicken)
Pathway
gga04519  Cadherin signaling
Brite
KEGG Orthology (KO) [BR:gga00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04519 Cadherin signaling
    423718 (CDH23)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:gga03037]
    423718 (CDH23)
   04515 Cell adhesion molecules [BR:gga04515]
    423718 (CDH23)
Cilium and associated proteins [BR:gga03037]
 Primary cilia and associated proteins
  USH complex and associated proteins
   423718 (CDH23)
Cell adhesion molecules [BR:gga04515]
 Cadherins
  Major cadherins
   423718 (CDH23)
SSDB
Motif
Pfam: Cadherin CDH23_a-b Cadherin_FAT4_N Cadherin_CELSR2_9th Ig_Cad99C_N Cadherin_2 Fibulin_C PCDH15_12th Nup54_a-b
Other DBs
NCBI-GeneID: 423718
NCBI-ProteinID: XP_004942104
CGNC: 3445
Ensembl: ENSGALG00000004653 ENSGALG00000036824
Position
6:12518477..12647045
AA seq 1770 aa
MPYPIVHPLQSITCAHPEHHAASSILATTKVFVTILDENDNAPVFQQQLYEVTLDEGPAT
LNATLVTVQALDRDEGPNSTVTYAITEGNILGTFYINSTTGQIRTLKELDYEISHGRYTL
VVTATDQCPIASRRLTSTTTVLVNLNDINDNCPTFPRPYEGPFDVTEGQPGPRIWTFLAH
DGDSGPGGQVEYSIIAGDPLGEFVISPVEGELRVRKDAELDRENIPFYNLTISARDRGVP
PLSSTMLVGVRVLDINDNDPVLLNLPMNITLSEHAPVSSFVTRILAQDADQGPNALLTFD
ITAGNKESAFYINSTTGIIYVNRPLDREQVAEYRLTITVKDNPENIRNARRDFDLLVISI
ADENDNHPLFTQSSYQAEVMENSPAGTPVTMLNGPILALDSDQGSNAVVTYQLLGTSPDL
FIINNRTGVVSVKPGGVIDREALLDPLLEFTLIALDTGGLNSTASLTVTILDDNDNRPVF
QPVSITARLRENSPPGFSVLQVTATDADSGLNKQLDYRIEGGGQDRFLIDATTGVIRVAN
LSIDREERDAYQLTVVAVDQGTPALSGTATVSIFIDDVNDCRPEFINPIQTVSVPESATP
GTVVAEVTAIDRDLHPRLEYYLLEIVARDDTDALVSDQQGTFTVDFRTGAVKIKNPLNRE
LVATYEVTISVHDNASEVTDRSVSVPNAKLTVNVLDVNDNTPRFRPFGVTYFTERILEGA
TQGTTLISISAVDPDKGANGQITYELLDLSPEGYACLEDQSAGKVVANRTVDYEEVQWLN
FTVRASDNGSPRRSAEIPVYLQIVDINDNNPIFSQPSYQKAVFEDVPLGTVILRVKATDA
DSGRFAVIQYSLGDGEGKFGINPDTGDIYILSALDREKKDHYTLTAVARDNPGDISSNRR
ENSVQVLITVLDINDFRPQFSKSQFSTSVYENEPAGTSVITMTATDLDEGDNGVVTYSIE
GPGAEAFKINKDSGLITSRRRLQSYERFNLTVVATDKGRPPLWGTTMLHIEVIDINDNRP
VFVRPPNGTILHIKEEIPLRSNVYEVYATDKDEGLNGAVLYSLLKTGAGNKDWEYFSIDA
VSGLIQTAMRLDREKQAEYNLIIVASDQGQPAYETMQPLQVALDDIDDNEPIFLRPSRDS
PQYQALSVPEHSQPGTVVGNVTGAVDADEGSNAIVYYFIAAGNRESNFQLSREGKLQVLR
DLDREKEPYYSIIVKASSQRNWSPPRSQRAGRAQHWDLSTDLTLQEVRIFLDDINDQSPQ
FTKSEYTAGVATDAKVGSELIRVLAVDADVGNNSLVLYSILGIRYIKQHSNDSEEVANIF
SIGTLDGILRTFDLFTAYNPGYFVVDIMASDLVGHNDTAIVGIYILRDDQRVKIIINEIP
DKVRQFEEEFISLLSNITGAIVNTDDVQFHVDKKGRVNFAQTELLIHVVNRETNRILDVE
RVIQMIDENKEQLRNLFRNYNVLDVQPAITAHAPDDLSALQMAIIVLAVLLFLAAMLFIL
MNWYYRTVHKRKLKAIVAGSTGNRGFMDIMDMPNTNKYSFDGANPVWLDPFCRTMELAAQ
AEHEDDLPENLSEITDLWNSPARTHGTFGREPSAAKPEDDRYLRAAIQEYDNIAKLGQIM
REGPIKGSLLKVVLDDYMRLKRLFAQRMVHKATSSQGDRSSVTELIQKDLEEDEERSPSQ
GSLRFRHKQPVELKGPDGIHVVHGSTGTLLASDLNSLPEDDQKVLGRSLETLTADCGAYD
HNARTESAKSTPLHKMREVIMESPLEITEL
NT seq 5313 nt   +upstreamnt  +downstreamnt
atgccgtaccccatagtacatcctctccagagcatcacctgtgcacatcctgagcaccac
gctgcttcaagcatcttggccaccaccaaagtgttcgtcaccatcctggacgagaatgac
aatgctccagtgttccagcagcagctgtatgaggtgacgttggacgagggccccgccaca
ctcaatgccacacttgtcaccgtgcaggccctggaccgggatgaagggcccaacagcaca
gtcacatatgctatcaccgaaggcaacatcttgggtactttctacatcaacagcaccacg
ggacagatccgcaccctgaaggagctggactacgagatcagccacgggcgctacaccttg
gtggtcactgccaccgaccagtgccccatcgcctcgcgtcggctgacgtcaaccaccacg
gtgctggtgaatctcaacgacatcaatgacaactgtcccaccttcccgcggccctacgaa
ggccccttcgacgtgacagagggacagcccggcccccgcatctggaccttcctggcccac
gatggggactcagggcccggcgggcaggtggagtacagcatcatcgctggggaccctctg
ggggagtttgtgatctccccagtggaaggggagctgcgggtgcggaaggatgctgagctg
gaccgcgagaacatccccttctacaacctcactatctccgcccgggaccggggtgtgccc
ccgctcagctccacgatgctggtgggcgtgcgtgtgctggacatcaatgacaacgacccc
gtgctcctcaacctgccaatgaacatcaccctcagtgagcacgccccggtctccagcttt
gtcacacgcatcctcgcccaggatgcagaccagggcccaaacgccctccttaccttcgat
ataactgctggcaacaaagagagcgccttctacatcaacagcaccaccggcatcatctac
gtaaaccgccccttggacagggaacaagtggcagagtacaggctgaccatcacagtgaag
gacaaccctgagaacatccgcaatgccaggcgggattttgacctgctggtcatttccata
gcggatgaaaacgacaaccaccccctcttcacccagagctcctaccaggccgaggtgatg
gagaactcgcccgcggggactccagtcaccatgctcaatggacccatcctagctctggac
agtgaccagggcagtaatgctgtagtgacctaccagctcttggggacgtccccagacctc
ttcattatcaacaataggacaggtgttgtttcagtgaagcctggtggtgtgatagaccgt
gaagctttgctggacccactgctggagttcacgctgatagcccttgacactggggggctg
aacagcactgctagccttacagtgaccatcctggatgacaatgacaaccgccctgtcttc
cagccagtgtccatcacagctcggctgagggaaaacagccccccaggcttttccgtcctc
caggtgacagccacagatgcagacagtggcctcaacaagcaactggattacaggatcgag
ggtgggggccaggacaggttcctgattgatgccaccacaggggtgatccgcgtggccaac
ctcagcattgatcgggaggagcgggatgcctaccagctgacggtggttgccgtggaccag
ggcacaccagctctctcaggcactgccactgtcagcatctttattgatgatgtcaatgac
tgccggcccgaattcatcaaccccatccagacggtcagcgtgcctgagtcggccacccct
ggcaccgtggtggctgaggtgactgccattgaccgggacctccatccacgcctggagtac
tacctgctggagatcgtggcccgagatgacacagatgcactggtgtccgaccagcaggga
acgttcacggtggatttcaggacaggagctgtgaagatcaaaaatcccctcaaccgggaa
cttgtggccacctatgaggtcaccatctctgtccatgacaatgccagtgaagtcactgac
cgctcagtcagcgttcccaatgccaaactgacagttaacgtcttggatgtcaatgacaac
acaccacgcttccgtccatttggggtcacctatttcacagagcggatcctggagggagcc
acacagggcaccacactcatctccatctctgcagtagacccagacaaaggagccaacggg
cagatcacctatgagctgctggacttgtccccagaaggctacgcatgcctcgaagatcag
tcggcagggaaggtcgtggccaacaggacagtggactacgaggaggtgcagtggctgaac
ttcactgtccgagcttccgacaacggctctccccgcagatccgctgagatccctgtgtac
ctccagatagtggacatcaatgacaacaaccccatcttcagccagccatcctaccagaaa
gccgtctttgaggacgtgccattgggtacagtcatcctgagggtcaaggccacggatgcg
gattctgggcgctttgctgtcatccagtacagcctaggggatggagagggcaagtttggg
ataaatcctgacacgggggacatctacatcctgtcagccctggaccgggagaagaaggac
cactacacgctgacagctgtggccagggacaaccctggggacatctccagtaaccgtcgg
gagaattcggtgcaggtgctgatcactgtcctggacatcaatgacttcagaccgcagttt
agcaagagccagttcagcaccagcgtctacgagaatgagccagcgggtacgtcagtgatc
accatgaccgcaacagacctggatgagggggacaacggtgtggtgacctatagcattgag
ggtcctggagcagaggccttcaaaatcaataaagactctgggcttatcacatcccggcgg
cgcttgcagtcctatgagagattcaaccttaccgtggtagccacagacaaaggtcgtccc
ccactctgggggaccaccatgcttcacattgaggtcattgacatcaatgacaaccgccct
gtctttgtccgtccacccaacggcaccattctgcacatcaaggaggaaatccctctgcgc
tccaacgtctacgaggtctacgccacagacaaggatgagggcctcaatggggcagtacta
tacagcctcctgaaaaccggggcggggaacaaggactgggagtatttcagcattgatgct
gtcagtgggctgatccagacggccatgcgcttggaccgggagaagcaagcggagtacaat
ctgatcattgtggcctccgaccagggccagccagcctatgagacgatgcagcccctccag
gttgctcttgatgacattgatgacaatgagcctatcttcctcaggccatctagagacagt
ccccagtaccaggcactctccgtccctgagcactcacagcctggcaccgtggtgggcaat
gtcactggtgcggtggatgcagatgagggctccaatgccattgtctactacttcatagca
gctgggaaccgagagagcaacttccagctgagccgggagggaaagctgcaagtcctgcgc
gacctggaccgtgagaaggagccctactactccatcattgtcaaagcatccagccagagg
aactggtccccaccccggagccagcgagcaggcagagcacagcactgggacctcagcaca
gatctgacccttcaggaggtacggatcttcttggatgacatcaatgaccagtccccccag
ttcaccaagtcggagtacacagcaggggtggccacagatgccaaggtgggatcagagcta
atcagggtcttggcagtggatgccgatgtgggcaacaacagcctggtcctgtacagcatc
ctggggatccgctacatcaagcagcactccaatgattctgaggaggtggccaacatcttc
agcattggaactcttgatggcatcctaagaaccttcgatctcttcacggcctacaacccc
ggctactttgtggtggacatcatggcctctgacctggtgggccacaatgacacagccatt
gtggggatctacatcctgcgggatgaccagagagtcaaaatcatcatcaatgagatcccc
gataaggtcaggcagtttgaggaggagttcatcagtctgctttccaacatcacgggtgcc
atcgttaacacagacgacgtgcagttccacgtggacaagaaaggccgggtgaactttgca
cagacagaactgctgatccatgtggtgaacagggagaccaaccgcatcctggatgtggag
cgggtgattcagatgattgatgagaacaaggagcagctgaggaacctcttcaggaactac
aacgtgctggatgtacagcccgccatcactgcccacgccccggatgacctctcagctctg
cagatggcgatcatcgtgctggctgtcctgctcttcctggctgccatgctcttcatcctc
atgaactggtactaccgcacagtgcacaaaaggaagctgaaagccattgtggcgggctcc
acagggaacagaggcttcatggacatcatggacatgccaaacaccaacaagtactccttt
gacggggccaaccccgtgtggctggaccccttctgccggaccatggaattggcggcacaa
gcggagcatgaagatgacctgcctgagaacctgagcgagatcactgacctctggaacagc
ccagccaggacccatggcacctttggcagagagccctcagctgccaaacctgaggatgac
cgctacctgcgagctgccatccaggagtacgacaacattgccaagctggggcagatcatg
cgcgaggggcccatcaagggctctctcctgaaggtggtcctggatgattacatgcgcttg
aaaaggctctttgcccagcggatggtgcataaggccacctccagtcagggggaccgctcc
tcggtcacagagctcatccagaaggacctggaggaggacgaggagcgcagccccagccag
ggcagcctgcgcttccggcacaagcagccagtagagctgaaaggccccgatggcatccat
gtggtgcacggcagtacaggtacactgctggcctctgacctcaacagcctccctgaggat
gaccagaaggtgctggggcgctcactggagactctaactgccgactgcggggcttatgac
cacaacgcccgcaccgagtcggccaagtctacccccctgcacaagatgcgggaggtgatc
atggagagcccactggagatcactgagctatga

  All links  
Gene (16)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (2)   
   CGNC (1)   
   OC (1)   
Protein sequence (20)   
   RefSeq(pep) (20)   
DNA sequence (26)   
   RefSeq(nuc) (24)   
   GenBank (1)   
   EMBL (1)   
Protein domain (9)   
   Pfam (9)   
All databases (71)   

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