KEGG   Gallus gallus (chicken): 424056
Entry
424056            CDS       T01006                                 
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X2
  KO
K12828  splicing factor 3B subunit 1
Organism
gga  Gallus gallus (chicken)
Pathway
gga03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    424056 (SF3B1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:gga03041]
    424056 (SF3B1)
   03036 Chromosome and associated proteins [BR:gga03036]
    424056 (SF3B1)
Spliceosome [BR:gga03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    424056 (SF3B1)
 Complex B
    424056 (SF3B1)
 Complex C
   U2 SnRNP specific factors
    424056 (SF3B1)
Chromosome and associated proteins [BR:gga03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    424056 (SF3B1)
SSDB
Motif
Pfam: SF3b1 HEAT_EZ Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG CEP104-like_TOG TALPID3
Other DBs
NCBI-GeneID: 424056
NCBI-ProteinID: XP_015144977
CGNC: 6082
Ensembl: ENSGALG00000008038
Position
7:complement(10184804..10205189)
AA seq 1156 aa
MNARTYMDVMREQHLTKEEREIRQQLAEKAKAGELKVVNGAASQPPSKRKRRWDQTADQT
PGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGSETPGATPGSKIWDPTPSHTPAGAAT
PGRDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGSGWAETPRTDRGGDSIGETPT
PGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTPAMNMATPTPGHIMSMTPEQLQAWRW
EREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPLGGMTGFHMQT
EDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVDESTLSPEEQKERKIMKLLLKIKNGT
PPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVR
PYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTT
ARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVE
IIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLK
AIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKT
EILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMV
METIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPY
LPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPE
VLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAE
YVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQN
RVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYA
VTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQ
AVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRIY
NDEKNTYIRYELDYIL
NT seq 3471 nt   +upstreamnt  +downstreamnt
atgaatgccagaacatacatggatgttatgcgtgaacagcatttaacaaaagaagagagg
gagattaggcaacagctagctgaaaaagctaaagctggagagcttaaagtcgtcaatgga
gccgcatctcagccaccatcaaaacgcaagcggcgttgggatcaaacagctgatcagact
cctggtgcaacacctaaaaagttatccagttgggatcaagcagagactcctggacacaca
ccatctctgcgatgggatgaaactccaggccgtgcaaagggtagcgaaactcccggtgcc
acccctggctcaaagatatgggatcccactcccagtcacacgccagcaggagctgcaaca
cctggacgggacacacctggtcatgcaacaccaggccatggaggtgccacttccagcgca
cgtaaaaatcgatgggatgaaactcctaaaacagaaagagatactccgggacatggcagt
ggatgggctgagactcctcgtacggatagaggtggtgattccattggtgagacaccaacc
ccaggagcaagtaaaagaaagtcccgatgggatgaaacacctgctagccagatgggtggc
agcactcctgttttgacacctggcaaaacacccattggtacaccagctatgaacatggca
actcctacgccaggtcatatcatgagcatgactcctgaacagctgcaggcttggcgctgg
gagagggaaattgatgagagaaacagaccactttctgatgaagaattggatgctatgttc
ccagaaggatataaggttcttcccccaccagctggttatgtacctattcgtactccagca
cgtaaacttacagcaactcccacacctttgggtggtatgactggattccacatgcagaca
gaggaccggactatgaagagtgtcaatgaccagccttctggcaaccttccattcctgaag
ccagatgatatccagtacttcgataagctgctggttgatgttgatgaatcaactctcagt
cctgaagagcagaaggagaggaagataatgaaattacttttgaaaataaagaatggcaca
cctcccatgagaaaggctgcattgagacaaattactgataaagctcgggaatttggagct
gggccactgtttaatcagattctaccattgctgatgtccccaacactggaggatcaggag
cgccacttacttgtcaaagtcatagacagaattctgtacaaactggatgacctggtccga
ccatacgtacataagattcttgtcgtcattgaaccactgctgattgatgaagactattac
gccagagtggaaggcagagaaattatttccaacttggctaaggctgctggtttggcaaca
atgatttctacgatgcgacctgatattgataacatggatgaatacgtccgaaataccaca
gctcgagcctttgctgttgttgcctctgctttgggcattccttctctgttgccgttcttg
aaagctgtctgtaaaagcaaaaaatcctggcaagcgaggcatactggcatcaagattgtg
cagcaaattgctattcttatgggttgtgctatcttgcctcatctcaggagcttggttgaa
attattgaacatggtcttgtggatgagcagcagaaggttcgtaccatcagtgctttggct
attgctgctttagctgaggcagctactccctatggtattgagtcattcgattctgttctg
aagcctttatggaagggtatacgtcaacacagaggaaagggtttggctgcatttttgaag
gctattggttatctgattccactcatggatgctgagtatgcaaactattataccagagaa
gtcatgttaattcttatcagagagttccagtctcctgatgaagagatgaaaaaaattgtt
ctgaaggtggtaaagcagtgttgtggtacagatggtgttgaagcaaactacattaaaaca
gaaatcttgccaccatttttcaaacacttctggcagcacagaatggcattggacaggaga
aattacagacagctggtggatacaacagtggagctggcaaataaagttggagcagcagaa
attatttctaggattgtggatgatctgaaagatgaggctgaacagtacagaaaaatggtc
atggaaacaattgagaagataatgggaaatctgggtgcggcagacattgatcataagcta
gaagaacaactaattgatgggatcttgtatgcctttcaagaacagaccacagaggattct
gtgatgctgaatggctttggcacagtggttaatgctcttggcaaaagagtgaagccctac
ctgccgcagatctgcggtacggttctgtggcgtttgaacaacaagtcggcgaaggtgcgg
cagcaggctgctgacctcatctctcgtactgcggtggtcatgaagacttgtcaagaggaa
aaactgatgggacatctgggtgttgtgctgtatgagtacctgggtgaagaatatccagag
gtactgggcagcatccttggagcgcttaaggctattgttaatgtcataggtatgcacaag
atgactccacctatcaaagatctgctgccacggcttacacctattttgaagaacagacat
gagaaagtacaggagaattgtatcgatctggttgggcgcattgcagacagaggtgcagaa
tatgtttctgcaagagaatggatgaggatctgctttgagctgctggagttactaaaagct
cacaagaaggctattcgaagagccacagtaaatactttcggatatattgcaaaagctatt
ggacctcacgatgtcttggctacgttgctgaataacttgaaagttcaggaaaggcagaac
agagtctgtactacagtagcaattgctattgtagctgaaacatgctcacctttcacagtg
ctgcctgcgctcatgaatgaatacagagttccagaactgaatgtccagaatggtgtgtta
aaatctctttctttcctgtttgaatacattggagagatgggaaaagattatatttatgcc
gttacgccattgcttgaagacgctttaatggacagagatcttgtacacagacaaacagcc
agtgctgtggtgcaacacatgtctcttggtgtttatgggtttggctgtgaagattccctt
aatcatttgttaaactacgtatggcctaatgtgtttgaaacctctccacacgtcattcag
gcagtcatgggggctctggagggcctcagagttgctattggcccttgccgaatgttgcag
tattgtttgcagggtttgtttcaccctgcccggaaagtcagagacgtttattggaagatc
tataattccatctacatcggctcacaggatgctctgatagcacactatccaagaatctat
aacgatgaaaagaacacctatattcgttatgaacttgactacatcttataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (106)   
   KEGG ORTHOLOGY (1)   
   RefGene (100)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (14)   
   RefSeq(nuc) (8)   
   GenBank (3)   
   EMBL (3)   
Protein domain (7)   
   Pfam (7)   
All databases (138)   

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