KEGG   Gallus gallus (chicken): 424226
Entry
424226            CDS       T01006                                 
Symbol
ERCC3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
gga  Gallus gallus (chicken)
Pathway
gga03022  Basal transcription factors
gga03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gga00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    424226 (ERCC3)
  09124 Replication and repair
   03420 Nucleotide excision repair
    424226 (ERCC3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gga03021]
    424226 (ERCC3)
   03400 DNA repair and recombination proteins [BR:gga03400]
    424226 (ERCC3)
Enzymes [BR:gga01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     424226 (ERCC3)
Transcription machinery [BR:gga03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     424226 (ERCC3)
DNA repair and recombination proteins [BR:gga03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     424226 (ERCC3)
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C DEAD SNF2-rel_dom AAA_22 AAA_34 AAA_2 DUF2605
Other DBs
NCBI-GeneID: 424226
NCBI-ProteinID: NP_001006523
CGNC: 8749
Ensembl: ENSGALG00000011515
UniProt: F1NZ23
Position
7:23626764..23643339
AA seq 780 aa
MGRKERDKKKSKKRHYEDEEEEEDDAPGKESQEAVPSAAGKQVEDSGAKLDEYGAKDYRL
QMPLKADNASRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHIHEYKLTAYSL
YAAVSVGLQTSDITEYLQKLSKTGVPEGIIQFIKLCTVSYGKVKLVLKRNRYFVESTHPD
VIQQLLQDHVIKDCRLRNAEGEETELITETFTSKSAISKSSESGFGPSTSQEADVQNKPD
VPADLYEFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLDYPLLAEYDFRNDSVN
PDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLV
LGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIDCSIAISTYSMLGHTTKRSWEA
ERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFL
IGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNKFRA
CQFLIKFHERRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKIN
TIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAFFYSLV
SQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEELSFSSKEEQQQLLQKVLQASDLD
AEEEVVAGEYGSKSVQMSRRTGTMSSMSGADDAVYMEYHSSRSKASSNKHIHPLFKRFRK
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgggcaggaaggagcgggacaagaagaagtccaagaagcggcactacgaggacgaggag
gaggaggaggatgacgctcccggcaaggagtcgcaggaggccgtgccctcggcggcgggg
aagcaggtggaggacagcggcgccaagctggacgagtacggcgccaaggactaccggctg
cagatgccgctcaaggccgacaacgcctcgcggccgctctgggtggctcccgatggccat
attttcctggaagccttttctccagtttacaaatacgcacaggattttttggttgccatt
gctgagcccgtgtgcagaccgacccacatccacgagtacaagctgactgcttactccctg
tacgccgccgtcagcgtgggcttgcagaccagcgatatcacagagtacctgcagaaactg
agcaagaccggtgtgccagagggcatcattcagttcatcaagctgtgtaccgtcagctat
gggaaggtgaagctggtgctgaaacgcaacaggtattttgtggaaagtacccatcctgat
gtcattcagcaacttctgcaagaccacgttattaaagactgtcgcctgagaaatgctgaa
ggtgaagaaacagagctcattacggagacattcaccagtaaatcagcgatttccaagtcc
agtgaaagtggctttggtccatcgacatcgcaagaagcagatgttcaaaacaagccggat
gtcccagctgacttatatgagttttatgagcagatggacaaagatgaggaggaggaggaa
gaaacacagacagtatcttttgaagtcaagcaggagatgattgaagaacttcagaagcgt
tgtatccatttggactaccccttgctggcagaatatgatttcagaaatgattctgtgaat
cctgatattaatatagatctgaaacctacagctgtcctcagaccctatcaagagaaaagc
ctgaggaagatgtttggaaatgggcgagccagatctggtgttattgtcttgccatgtggt
gctggcaagtctctagttggagtgacagctgcatgtactgtccgcaagaggtgtctggtc
cttggtaattctgcggtgtctgtagaacagtggaaagcacagttcaagatgtggtccacc
atcgatgacagtcagatatgtcggttcacctccgatgccaaagataagcccattgattgt
tctattgctatcagcacctattccatgttgggacacacgactaaaagatcctgggaagca
gagagagtaatggagtggcttaaaagtcgagagtggggccttatgatactcgatgaagta
catactattcctgcaaaaatgttcagacgtgtgctcactattgtacaagctcattgtaag
ctgggactgactgctaccctggtcagagaagatgataaaattgttgatctgaacttcctg
attggaccaaagctctatgaggccaactggatggagctgcagaacagtggctacattgct
aaagtccaatgtgctgaggtttggtgcccaatgtcacccgaattttatcgagaatacgta
gcaatcaaaacaaagaaacggatactgctgtacaccatgaacccaaacaagtttagagct
tgccagttcctcattaagtttcatgagcgacggaatgataaaatcattgtttttgctgac
aatgtgtttgcactgaaggagtacgcaatcagacttgggaaaccttatatatatggtcct
actgcacaaggagaaagaatgcaaattctacaaaacttcaagcacaatccaaaaatcaac
actattttcatttcaaaggtgggtgacacatcctttgatctacctgaagccaatgttctg
attcagatttcatcccacggtggatctcgaagacaggaggctcaaagactggggcgagta
ctgagagccaaaaaaggcatggttgcagaggaatacaatgcctttttctattctcttgta
tcccaagacactcaggaaatggcatattcaacaaagcgacagcggtttcttgtagatcaa
ggctatagcttcaaggtaataacaaagcttgcaggcatggaagaagaagaactttcattt
tcatccaaagaagaacagcaacaacttcttcagaaagtcctacaagcatctgacctagat
gccgaggaggaggtagttgctggagaatatggttcaaagtctgttcagatgtcacgtcgc
acaggcacaatgagctctatgtcaggagccgatgatgcggtttatatggaatatcactca
tctcggagtaaggcatcttcaaataagcacatccatcccctatttaagcgcttccggaaa
tga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   CGNC (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (10)   
   Pfam (10)   
All databases (40)   

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