KEGG   Gossypium hirsutum (upland cotton): 107886275
Entry
107886275         CDS       T04793                                 
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of RNA polymerase II transcription subunit 23
  KO
K15166  mediator of RNA polymerase II transcription subunit 23
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107886275
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Mediator complex
    Other mediators
     107886275
SSDB
Motif
Pfam: Med23 LexA_DNA_bind
Other DBs
NCBI-GeneID: 107886275
NCBI-ProteinID: XP_040953770
Position
A03:complement(86979472..86991973)
AA seq 1603 aa
MDQTQRSVAAAANSRTYQFHPARAAITDLFNLYLGRNSRQKADDSVREPPNKTQKRVLAL
NRELPPRNEQFLLDFEQLQTQFGDQDQLQSVTESVLISLVIQCCSHAPRAEFLLFALRSL
CSIGYVNWDTFLPSLLSSVASAEGPVSQGSQGVPSVSSSVSQSGMMPSTSVIANASNFQS
ANAASTLTSVHVIGSPAQSTIEPSSGATLSPVKLSNIACSGQPSTTRMDSSIRDNAISNL
RQLCCKIILTGLECNLKPVTQAEIFHHMLNWLVNWDQRQHGNEECDGKSWRLEKALIEWL
HSCLDVIWLLVEEDKCRVPFYELLRSGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQM
LDQHLHCPTFGTHRILSQTTPNVSVEGVANLRYSPITYPSVLGEPLHGEDLAASIQRGSL
DWERALRCIRHAIRSTPSPDWWKRVLVVAPFYRGSVPTPGAVFTCDMICEATIDRIVELL
KLTNSEINCWQEWLVFSDIFFFLMKSGCIDFVDFIDKLGSRLSASDHHILNTNHVTWLLA
QIIRVEHVMTALNTDSRKVETTRKILSFHREDRSSDPNNPQSILLDFISSCQNLRIWSLN
TSTREYLNNEQLQKGKQIDEWWRQVSKGERMMDYMSMDDKSIGMFWVVSYTMAQPACETV
MNWLSSGGVTELLPGANVQPNERFMVMREVSPLPISLLSGFSMNLYLKLVFQMEESLFAG
QVVPSIAMVETYTRLLLIAPHSLFRSHFSHLAQRNASLLSKPAVTLLVLEIVNYRLLPLY
RYQGKCKPLMYDVTKIISALKGKXGDHRVFRLAENLCINLILSLRDXFSVKREGKGPTEF
TETLNRITIITLAITIKTRGIADADHLLYLQTMLEQILATSQHTWSEKTLRFFPSILRDL
LMTRTDKRGLAIQEWLQSETTVINQCTQLLSSSAEPNYVMTYINHSFPQHRQYLCAGAWI
LMQGHPENINSGNLARVLREFSPEDVTSNIYTMVDVLLHHIHIELQHGHSLQDLLLKTCA
NLAFFVWTHELIPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLYCMNRGPPEHW
LYTGIFKRSDLQKALGNHLSWKERYPTFFDDIVARLLPVIPLVVYRLIENDAIESADRIL
GMYSLFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKIPFSESFPQHISSSNP
AICPPLEYFATLLLALVNNVIPPLNSNSRTGSMGDASNNSVRGPHNKTPATPQSGPANAS
EGQKAFYQIQDPGTYTQLVLETAVIEILSLPISASQIVSSLVQIVVNIQPTLIQSSNGLH
GASSGAVQGSVLPTSPSGGSTDSAGRSTPSVSGINTSSFVSRSGYTCQQLSCLFIQACGL
LLAQLPPEFHLQLYMEASRIIKESWWLTDGKRSLSELDSAVSYALLDPTWASQDNTSTAI
GNIVALLHSFFSNLPQEWLEGTHVIIQQLRPVTSVAMLRIAFRIMGPLLPRLVTAHNLFN
KILSLLLNTLVDVFGKNTQPPVPVEASEITDLIDYLHHIIHYEGQAGPVQANSKPRPEVL
SICGRAAESLRPDVQHLLSHLKPDVNSSIYAATHPKIAQNPSS
NT seq 4812 nt   +upstreamnt  +downstreamnt
atggatcaaacgcagagatcagtggcagcagctgcaaattcccgaacctaccagttccac
cctgcccgagccgccattaccgatctcttcaatctttacttaggaagaaatagccgccaa
aaagctgatgattctgttcgagaaccaccgaacaaaacccaaaagcgtgtgctcgctctt
aatagagagcttcctcctcgaaacgagcagttcctcctagattttgagcaacttcagact
cagtttggtgaccaagatcagttgcagtctgtgacagaatctgttctaatatctttggtt
attcagtgctgtagtcatgcacctcgggcggagtttcttctttttgctttacgtagctta
tgtagtataggctacgttaattgggatacctttttgccatcccttctttcttcagttgcc
tctgcggaagggccagtaagtcaagggagtcagggagtaccttctgtttcatcaagcgta
tcacaatccgggatgatgccatctactagtgtaattgctaacgcttctaattttcagtct
gcgaatgctgcatctacgttaacttcagttcatgttattgggtctccagcacaatcgaca
attgaaccttcttcgggtgctactttgtcccctgtaaaattatctaatattgcctgcagt
ggtcaaccatctacaactaggatggattcatctataagagataatgctataagcaattta
cgtcagctatgctgcaagataattttaactgggcttgaatgtaatttgaaaccagtgact
caagctgaaattttccaccatatgctgaattggttggttaattgggatcaaaggcaacat
gggaatgaggaatgtgatggaaagtcctggagactggagaaggctctaattgaatggctg
cacagttgtttggatgtaatttggttgttggttgaggaagataaatgcagagtgcccttc
tatgaattactccgaagcggattgcagtttatagaaaacatcccagacgatgaagcattg
tttacgcttatcttggaaatacatagaaggagagatatgatggctatgcatatgcaaatg
ttagaccaacaccttcactgccccacatttggaactcatcggatattgtcacagacaact
cctaacgtttctgttgaaggtgtggcaaacttgcggtattcaccaattacatatccaagt
gtgcttggagaaccacttcatggagaggatcttgcagcttctatccagaggggtagtttg
gactgggagagagccttacgttgtataaggcatgctatacgctctactccttctcctgat
tggtggaaacgtgtgcttgttgtggcacctttttatcgaggttcagtgcctactcctggt
gctgtttttacatgtgatatgatttgcgaggcaacaattgatagaattgttgagcttttg
aagttgacaaattcagaaataaattgctggcaggagtggcttgtcttctcagatatattc
ttctttcttatgaaaagtggatgtatagattttgttgattttattgataagctgggctca
cgcctttcagcaagtgatcaccacattcttaatacaaatcatgttacctggcttcttgca
caaatcattcgagttgagcatgtcatgactgctttgaatactgattctagaaaggtggaa
acaacaaggaagattctatcatttcacagagaagataggagctctgatcctaataatccc
caaagcatcctgcttgattttattagcagttgtcaaaacttacgcatttggtcactgaat
acatcaaccagagaatacttgaataatgaacagttgcagaaagggaagcaaatagatgag
tggtggagacaagtgagcaaaggggaacgcatgatggattatatgagtatggatgataaa
tcaattgggatgttttgggttgtctcctacacgatggcgcagccagcttgtgaaacggtc
atgaattggttatcttctggtggagttacagagttgttacccggagcaaatgtacagccc
aatgagagattcatggtgatgcgggaagttagtccattgccgatttcactgttatctggc
ttttcaatgaatctttatttgaagttggtctttcaaatggaagaatctttatttgctggg
caggttgttcctagtattgctatggttgaaacatacaccagattgttgctcattgcacct
cattcgttatttcgttcacacttcagtcatttggcacagaggaatgcttctttattgagc
aagcctgcggtgacacttctggtgcttgaaattgtcaactatcgtctgcttccactgtac
aggtaccaaggaaaatgcaaacctctgatgtatgatgttacaaagataatttctgcttta
aaaggaaaancgggggatcaccgtgtatttagattggcagagaatttgtgcataaatctg
attttgtctttgagagacnttttctcggtgaaaagggaagggaaggggcccactgaattc
acagaaactttaaatcggataactataatcactcttgccatcaccattaaaacccgcgga
attgcagatgctgatcacctactttaccttcaaactatgttggaacagatattggcaact
agccaacatacatggtcagagaaaacactacgtttttttccctctattcttcgagatctc
ttaatgacacggacagacaaaagaggacttgcaattcaagaatggctacagtcagaaaca
acagtgattaaccaatgcacacaacttctttcatcatctgctgaaccaaattatgtcatg
acctatatcaatcacagtttccctcaacaccgccaatatctgtgtgctggtgcatggata
ttgatgcaagggcatcctgaaaacattaacagtggaaacttggcacgggtattgagagaa
ttttcacctgaagacgtgacatccaatatctatacaatggtggatgtattacttcatcac
attcacatagagctgcagcatgggcattccttgcaggaccttttactgaaaacttgtgca
aacctggccttttttgtttggacccatgagctgattcctttggatatattgcttctagca
ctcattgaccgtgacgatgatccccatgcgctgcgtattgtgataagcttacttgacagg
caagagcttcaacaaagggtgaaattatactgcatgaatcgtggcccccctgagcattgg
ctttacactggaatatttaagcgcagtgacttgcaaaaagcccttggcaatcatctctca
tggaaggagaggtatcctacattcttcgatgatattgtggcacgtctgcttccagtcatc
cccttagttgtttacagacttattgagaatgatgctatagaatctgctgacaggattttg
ggcatgtattctctatttttagcttaccaccctttgagatttacatttgttcgtgacatt
cttgcgtatttctatggtcatctacctggaaagttaattgttcgaatattgaatgtacta
gatctcagcaagattccgttttctgagtcgttccctcagcacattagttcatcaaatcct
gcaatatgccccccactagaatattttgcaactcttttattggctctagtgaataatgtc
atacccccattaaacagtaactcaagaactggatcaatgggggatgcttctaataattca
gtgcgtggtcctcataataaaacccctgcaacacctcagtctgggccagcgaatgcttct
gaaggtcaaaaggcattctatcaaattcaggacccagggacatatactcagctggttctg
gaaacagccgtcatagagatcctctctcttcccatttccgcttctcagattgtgtcatct
cttgttcaaattgttgtcaacatacaaccaactctgattcagtccagcaatggattgcat
ggagcttctagtggtgccgtgcaaggttcagttttaccaacatccccttctggaggcagt
acagatagtgctggcagatctactccttcagtgtcggggatcaacacctctagttttgtt
tcccgaagtggttacacttgtcaacagctttcatgcttatttatccaagcttgtggtttg
ttgttggcccaactccctcctgagtttcacttacagctttacatggaagcttcacgaata
attaaagagagttggtggctaactgatgggaagagatcattgagtgaactagactctgct
gttagctatgctttgttggatccaacatgggcttcccaagataatacctctacggccata
ggtaatatagttgcattacttcattctttcttcagtaacctcccacaagaatggctagag
ggaacacatgtcattattcaacagctccggccggtaacatcggttgctatgttgagaata
gcattccggataatgggccccttgcttccaagacttgttactgctcacaatctttttaac
aagattctatcgttactattgaatacactggtggatgtatttggaaaaaacactcaaccg
ccagtccctgtggaagcatcagaaataacagatctgatcgactaccttcaccatatcatc
cactacgaaggacaggcagggccagtgcaagccaacagcaagccgaggccagaggtgttg
agtatttgtgggagagctgcagaaagtctacggccagatgtacagcatcttttatcccac
ttgaaacctgacgttaactcttcaatatatgctgctacgcatccaaagatagctcagaat
ccttcctcctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

Download RDF
DBGET integrated database retrieval system