KEGG   Gossypium hirsutum (upland cotton): 107888755
Entry
107888755         CDS       T04793                                 
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
  KO
K08735  DNA mismatch repair protein MSH2
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    107888755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107888755
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     107888755
SSDB
Motif
Pfam: MutS_V MutS_III MutS_IV MutS_II MutS_I
Other DBs
NCBI-GeneID: 107888755
NCBI-ProteinID: XP_016668437
UniProt: A0A1U8HQV9
Position
A09:complement(41890094..41898348)
AA seq 943 aa
MDENFDEQNKLPELKLDAKQAQGFLSFFKTLPNDPRAVRFFDRRDYYTAHGENATFIAKT
YYRTTTALRKLGSGSNGLSSVSVNKNMFETITRDLLLERTDHTLELYEGSGSNWRLVKSA
SPGNLSSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGFSYVDLTKRILGLAEFLDDSH
FTNVESALVALGCKECLLPLESGKSSECRTLSDALTRCGVMVTERKKTEFKARDLVQDLG
RLVKGSIEPVRDLVSGFEFAPAALGALLSYAELLAVEGNYGNYSICRYNLGSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDVSEINSRLDLVQAF
VEDTELRQDLRQHLRRISDIERLMRNIQRTRAGLQHIVKLYQSSIRVPHIKSALEKYDGQ
FSSLIKERYLDPFELLTDDDHSNKFIALVETSVDLDQLENGEYMISPSYDDALATLKSEQ
ESLERQIHNLHKQTAFDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVVQTTATFSEVFEHLAGFLSELD
VLLSFADLASSCPTPYTRPRITPPDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCEKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATENSLVIIDELGRGTSTYDGFGLAWAICEHIVEAIKAPTLFATH
FHELTALAHENGNYELQKKQIVGVANYHVSAHIDSSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPESVVALAREKAAELEDFSPTSIISTDAGQEQEGSKRKRGYDADDISRGAAKAHK
FLKEFAELPLETMDLKQALQQVTKLKDDLQKDANNSEWLQQFF
NT seq 2832 nt   +upstreamnt  +downstreamnt
atggatgaaaattttgatgaacaaaacaagcttccagagctcaaactagacgctaagcag
gctcaagggtttctctcatttttcaaaactctaccgaatgatccaagggctgttcggttt
tttgatcgccgggattattatactgctcatggtgaaaatgcaacctttatcgctaaaaca
tattatcgtactactactgctctccggaaactcggtagtggctcgaatggtctttcaagt
gtaagtgttaataaaaacatgtttgaaacaatcacccgtgatcttctcctggagagaaca
gaccacactctggagctctatgaaggtagtggctccaattggaggttggtgaaaagtgcc
agtcctgggaatctgagcagttttgaagatgttctctttgccaacaatgagatgcaggat
acacctgttgttgtcgcactgcttcctaacttccgtgaaaatggttgcactgttggattt
agttatgttgatttaacaaagagaatacttggtttggctgagtttcttgatgatagtcac
tttactaatgtggagtcagctttggttgctcttggttgtaaggagtgccttttgcccttg
gagagtggaaaatccagtgaatgtagaactctgagtgatgctttgaccagatgtggtgtt
atggtaactgagagaaagaaaactgaatttaaagcaagggatctggtgcaggatcttggt
aggctagtcaaaggctccattgaaccagttcgagacttggtttctgggtttgaatttgca
ccagctgctttaggagccttactttcttatgcagaattactagcagttgaaggaaattat
ggaaactatagcatttgtagatacaatctgggaagctacatgaggttagattctgctgca
atgagggcattgaatgtcctggaaagcaaaactgatgcaaacaaaaattttagtttgttt
ggtcttatgaatagaacctgtactgctgggatgggtaagcggttgcttcatatgtggcta
aaacagcctttgttagatgtaagtgagataaattcaaggctagatttggtacaggctttt
gtggaggatactgagcttcgccaagatttgagacagcatctaagaagaatttcagatatt
gaacgacttatgcgcaatattcaaaggacaagagctggtttgcagcatattgtaaaactt
tatcagtcaagtataagagttccccacattaaaagtgccctggaaaaatatgatggacag
ttttcttctttgatcaaggaaagatatttggatccttttgagctcttgactgatgatgat
cattcgaacaagtttattgctcttgttgagacttctgtcgacctagatcaacttgaaaat
ggggaatacatgatttcacctagttatgatgatgcactagctacactaaaaagtgagcag
gagtcactagagcgccaaatacacaatttacataaacaaactgcttttgatcttgatctg
ccggtagacaaggcattaaagttagataagggcacacagtttggacatgttttcagaatt
acaaagaaagaagagcccaaagtaaggaaaaagctctccacccaatttattgtccttgaa
acccgaaaggatggagtgaaattcactaacacaaagcttaaaaagttgggggaccagtac
caaaaggtacttgaggagtataagaattgtcaaaaagagctagtaaatcgagtggttcaa
actactgcaactttctctgaggtatttgagcacttagctgggtttctctctgaattggat
gtcctacttagttttgcagatttagcttcaagttgtcctaccccatacacaagacccaga
attactccaccagatgtgggggatattgttttagaaggaagtagacatccttgtgtggag
gctcaagactgggttaattttataccaaatgattgtagacttgtaagaggcaagagctgg
ttccagatcatcacgggacctaatatgggtggaaaatcaacattcatccgccaggttggt
gttaacattctaatggcacaagtaggctgttttgttccttgtgaaaaagctagcatttct
gttcgagattgtatttttgcccgtgttggtgctggtgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctactgagaattca
ttggtgatcatcgatgagttggggcgaggaacatcaacctatgatggatttggtttagca
tgggccatatgtgagcatattgttgaagcgattaaagcacctactctgtttgctacccac
ttccatgaactgactgctttagctcatgaaaatggcaattatgagttgcagaaaaaacag
atcgttggtgtggcaaactatcatgttagtgctcacattgactcatcaagtcggaaattg
acaatgctgtacaaggttgagccaggggcatgtgatcaaagttttggtattcatgtggca
gaatttgccaattttcctgaaagtgttgttgctcttgcaagagaaaaggctgctgaattg
gaagatttctcaccgacttcaatcatttcaactgatgctggacaagagcaggagggttca
aaaaggaagagagggtatgatgctgatgacatatctaggggtgctgcaaaggctcacaag
tttttaaaggagtttgctgagctgccattggagaccatggacctgaaacaggctctgcaa
caagtaaccaagctgaaggatgacttacaaaaagatgcaaacaactctgagtggcttcag
caattcttctag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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