KEGG   Gossypium hirsutum (upland cotton): 107889597
Entry
107889597         CDS       T04793                                 
Name
(RefSeq) LOW QUALITY PROTEIN: cell division cycle 5-like protein
  KO
K12860  pre-mRNA-splicing factor CDC5/CEF1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107889597
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107889597
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107889597
Spliceosome [BR:ghi03041]
 Complex B
  Other components
   Prp19 complex
    107889597
 Complex C
   Prp19-CDC5 complex
    107889597
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    107889597
SSDB
Motif
Pfam: Myb_Cef Myb_DNA-binding Myb_DNA-bind_6 DMRT-like
Other DBs
NCBI-GeneID: 107889597
NCBI-ProteinID: XP_016669569
UniProt: A0A1U8I1M2
Position
A11:complement(106902278..106907756)
AA seq 961 aa
MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKT
EWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLEQYEKLLDAACARDENYEPGDDPR
KLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARR
LASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPXGFYDVADEDRPVEQPKFPT
TIEELEGKRRVDIEAQLRKQDIAKNKIAQRQDAASAILQANKLNDPEAVRKRSKLMLPEP
QISNHELEEIAKMGYASDLLAGNEELAEASSATRALLSNYSQTPRQGVTPLRTPQRTPAG
KGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKRQVQTPNPMLTPAATPGGT
GLTPRIGMTPSRDGYSFGLTPKGAPIRDELHINEDMDLHDSVKLEQQRQADIRRNLRSGL
GSLPQPKNEYQIVIQPPPEESEEPEEKIEEDMSDRIARERAEEEAQQQALLKKRSKVLQR
ELPRPPSASLELIRDSLMRTDGDKSTFVPPTLFEQADEMIRKELLSLLEHDNAKYPLDEK
ANKGKKKGAKRSANGSIPSIEDFEEDEMKEADSWVKEEAEFLRVAMGHENESLDDFVEAH
NTCLSDLMYFPTRHAYGLSSVAGNTEKLAALQSEFDHVKKKMDNDKLKAEGMEKKFNVLT
QGYERRAATLWRQIESTFKQIDTAGTELECFQALQKQEQLAASHRINGLWEEVQKQKELE
QTSQSRYGNLIAEIERIQKIMNVYRVQAQKQAEAAEKDHALESSEAPASQAAVPSSGLSE
PAPSSEDVYSSLDGQPSLKIDMNVDSQEQHATMDLETGGNISGNVPLVVEDNGDNITKTP
AQDAGTSSEVVAESVNPDTVSTKPESIEEALEGEGFTDHAKIDSTCVLGGDTAENQTAME
E
NT seq 2886 nt   +upstreamnt  +downstreamnt
atgaggattatgataaaaggaggagtatggaagaacacggaggatgagatattgaaagcg
gcggttatgaaatatgggaagaatcaatgggcccgaatttcttctttacttgttcgtaaa
tctgctaagcaatgtaaggctcgttggtatgaatggcttgacccttcaatcaaaaagacc
gagtggacaagagaagaggatgaaaagctgttgcatctcgcaaagctcatgccaacacaa
tggagaacaattgctccaattgttggtcggactccatctcaatgtctagagcaatatgag
aaactccttgatgcagcttgtgctagagatgaaaattatgagcctggtgatgaccccagg
aaattacgtcctggagagattgatcctaaccctgaatcaaaacctgcacgaccggatcct
gttgatatggatgaggatgagaaagaaatgctttctgaagctcgtgcccggttagctaat
actagaggtaagaaggcgaagaggaaagctagggagaaacaacttgaagaggctaggagg
cttgcatctttgcagaaaaggagggaacttaaggctgctgggatcgatacaaggcaacga
aagagaaaaagaaagggaattgattataatgctgaaatcccctttgagaagaggcctcct
nccgggttttatgatgttgctgatgaagatagacctgtggaacagcctaagttcccaaca
accattgaagaacttgagggaaaaagaagagttgatattgaagcacagttacggaagcag
gatattgcaaaaaataaaattgcacagaggcaggatgccgcatcggcaatattgcaggcc
aacaagctaaatgatccagaagcagtgaggaagagatccaaacttatgctaccagaacct
cagatatcgaatcatgaactagaggagattgccaagatgggatatgccagtgatcttctt
gctggtaatgaggaactggctgaagcgagtagtgctactcgtgctcttctttcaaattat
tcccagactccacggcagggagtgacacctttacggaccccacaaagaacacctgctgga
aaaggtgatgctatcatgatggaagctgaaaatctggctaggttgagagaatcccaaacg
cctctacttggtggagaaaatcctgagctgcatccttcagatttttctggggtcactcct
aaaaggcaggtccaaacacccaacccaatgttgactcctgcggcaacccctggtggtact
ggtcttactcctcgaattggaatgacaccatcaagggatggctactcttttggtctgacc
cctaaaggagctcccatcagggatgagctccacataaatgaagacatggatctacatgac
agtgtcaagcttgagcaacaaaggcaagctgatataagaaggaacttgcgatctgggctt
ggtagtcttccacagccaaagaatgagtaccaaatagtcattcaaccacccccagaggaa
agtgaagaaccagaggagaaaattgaagaagacatgtctgatagaatagccagagaaagg
gctgaggaagaagcacagcagcaggcattgcttaagaagagatcaaaagtgttgcaaagg
gagcttccaagaccacctagtgcatcactggaactaattagagattctttgatgaggact
gatggagacaaaagtacctttgttcctcctactctatttgagcaggctgatgaaatgata
agaaaagagcttctgtccttgctggagcacgacaatgctaagtatccacttgatgaaaag
gcaaacaaagggaagaaaaagggtgcgaagcgttctgctaatggatctattccgagtata
gaagattttgaggaagatgaaatgaaagaggctgattcgtgggtaaaggaagaggctgaa
ttccttcgtgtggcaatggggcacgaaaatgaatctcttgatgattttgttgaagcacat
aatacttgcctaagtgatctcatgtacttccctactcgtcatgcttatggtctgtcaagt
gttgctggaaatacggagaaacttgcagccctgcagtctgaatttgaccatgtgaaaaag
aagatggataatgataagttgaaagcagaaggcatggagaagaagttcaatgttctcaca
cagggttatgagagacgggctgcaacactttggcgtcagattgaatcaacctttaagcag
attgatactgcaggaacagaactagagtgttttcaagcattacaaaagcaggagcagcta
gcagcttcacacagaataaatggtctgtgggaggaagttcagaaacagaaagagcttgaa
caaacctcacaaagtcgctacgggaatctcatagctgagatagaaaggatacaaaagatc
atgaatgtatacagagtacaagcacaaaaacaagcagaggcagctgaaaaggatcatgct
cttgagtcgtctgaggctccagcaagtcaagctgctgtgccaagctcaggactttccgag
cctgcaccttcctcggaggatgtttactcttctcttgatggccagccaagcctgaaaatt
gatatgaatgttgattcccaagaacagcatgctactatggatttggaaacaggtggaaac
atatctggtaatgtgcctttggttgtggaagacaacggagataatatcacaaagacaccg
gctcaggatgctggaacaagttctgaggttgttgcagaatctgtaaatcctgacacagtc
tctaccaaaccggaaagcatcgaagaagcgcttgaaggtgaaggttttaccgatcatgcc
aagattgacagtacatgtgtcttgggtggagataccgctgaaaaccaaactgcaatggag
gaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system