KEGG   Gossypium hirsutum (upland cotton): 107898593
Entry
107898593         CDS       T04793                                 
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107898593
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107898593
   03036 Chromosome and associated proteins [BR:ghi03036]
    107898593
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     107898593
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    107898593
   PBAF complex
    107898593
   GBAF(ncBAF) complex
    107898593
SSDB
Motif
Pfam: SWIRM-assoc_1 SWIRM Myb_DNA-binding ZZ Myb_DNA-bind_6
Other DBs
NCBI-GeneID: 107898593
NCBI-ProteinID: XP_016679585
UniProt: A0A1U8IN75
Position
D04:54959342..54964930
AA seq 1014 aa
MEEKRRDAVNSPAEPELASTRRRGGALKRKVNSLSGSSSSSTPSKRVTREKSNLISHSPV
NHYGPLTRARQGAPSGNLALGSSSGSGGAKLEETNLVKQSVKAEDLEELKASEELEALEA
KIEADFEAIRSRDSNAHVVPNHCGWFSWTKIHHLEESILPSFFNGKSPNRTPDAYKEIRN
WIVKKFHANPSKQIELKDLEDLEVGDLDARQEVLEFLDYWGLINFHPFPPAGSAVPNPNG
DGDGDGMTEKDSLLENLFHFDEIESRPQVVTKPNLSSPSLPSGLLPESAVAEDLMNPEGP
SVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGTFGSGMSSSDFILMEPADPGLSSS
KWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIADVFFNCDDNNIDTN
SKETAGPAAMNDETTVPKDVSETTESKTTQEDQAQTMPMETSKPEDEKEVRGSEEPSETK
TGTDAKGVKETLKPEDMNVPKDGLEATENCALTAIREAFEAVGYNLTSESKLSFADVGNP
VMALAGFFAHLVGPNIAAASSQSSLKSLSGTCPNIQLAARNCFVLEDPPDEKEPTCSRSV
ANDTGNRGAQNVKHSEDESLKGDQKSSLSHHGDENTEVSLREENATSPSPNDLTTDKKES
SNFATNEEDKKANLNESSIINQSKDHQPSVTRVSNNLTSQVLPSSLEETDGKETAKEPSQ
PPKAVKEVDMSGSVQLKKNEPCDAAASKPVGELSEPANASENLETASCSPSRSKNEQKTV
KPISDGESTEPADASDDVQLLSVSQPSERSEPPQPVTSNSVNENGVTTDKIEEGKSKNHD
STEREDNSSIDKLKRAAVTALSAAAVKAKLLADQEEDQIRQLTTSLIEKQLHKMEAKLSF
FNEMEGVVMRVKEQLDRSRQRLYHERTQIIAARLGLPASSSRAMPPPNAANRVATNFANS
VARPPMSMKAPRPPLSRPMGSMTPTPSNPYVSNTVAGSSIRPGSQDNLSSVGTK
NT seq 3045 nt   +upstreamnt  +downstreamnt
atggaggagaaacgccgggatgcggttaactccccggcggaaccggagctggcatcaact
cgccgtcggggtggagcgctgaagagaaaagttaattcgctttccgggtctagttcttca
tcaactccgtcgaaacgggttactcgggagaagtcaaacttgatctcccactctcccgtt
aaccattacggtccgttaaccagggctcgccaaggggcccctagtggaaacctagccttg
ggttcgagttcgggatcgggtggcgcaaagcttgaggagacgaatttggtgaaacaaagt
gtaaaggcggaagatttggaagaattaaaggcaagtgaagagttggaggctttggaagct
aagattgaggctgattttgaggctattaggtctcgtgatagtaatgcgcatgttgttcct
aatcattgcggatggttttcatggacaaaaattcaccatctggaagagagtatcttgcct
tctttctttaatgggaaatccccaaatcgtacccctgatgcatacaaggagattcgcaat
tggattgtgaagaaatttcatgcaaatccaagcaagcagattgagttgaaagatctggaa
gatcttgaagtcggtgacttggatgcaaggcaggaggtattggagttcctggactactgg
ggtttgattaattttcatccattccctccagctggttctgctgtgcctaatcccaatggg
gatggggatggagatgggatgacagaaaaggattctttgcttgaaaatttgtttcacttt
gatgaaattgaatcacgcccacaagttgttaccaagcctaacctttcaagcccatctcta
ccatctgggctacttccagaatctgcggtcgctgaggacttgatgaatccggaggggcca
tctgttgagtaccattgcaactcttgttcagctgattgctctaggaaacgctaccattgc
cagaagcaggcagattttgacttatgtactgattgctttaacaatgggacattcggttct
ggcatgtcttcatcggattttattctcatggaacctgctgaccctggtcttagtagcagc
aagtggacagatcaggaaacccttctccttcttgaggcacttgaactttataaagaaaac
tggaatgagattgcagagcatgttgctacgaaaacaaaagcacaatgcatactgcatttc
gttcaaatgccaattgcggatgtattttttaattgtgatgataataacatagacacgaat
tcaaaagaaactgctggcccagctgccatgaatgatgaaacaactgtccctaaagatgtc
tcggaaacaacagagagtaagactactcaagaagatcaggcccagactatgccgatggaa
acttcaaaacctgaagatgaaaaagaagtcaggggtagtgaggaaccatcagaaaccaaa
actggaactgatgcaaaaggtgttaaagaaacattaaagccagaagatatgaatgtacca
aaagatggactagaagcaactgaaaattgtgcccttacagcaataagggaggcatttgaa
gctgtcggttataatttaacatccgaaagcaaactttcatttgctgatgtaggaaatcct
gtcatggcattggcaggattctttgcacatctggttggacccaacattgctgctgcttca
tcccagagttcacttaaatcattatctggtacttgtccgaacattcaactggctgccagg
aactgctttgttttggaagatccaccagatgagaaggaaccaacatgttctaggagtgtt
gccaatgatacgggtaatcggggtgctcagaatgtgaaacactcggaagacgaaagcctc
aagggggatcagaaaagttcattgagccaccatggtgacgaaaacactgaagtctctctt
cgtgaagagaatgcgacatcgccttcacccaatgacctaaccacggataaaaaagagtca
agcaattttgccactaatgaggaagataaaaaagctaatttgaatgaatccagcattatt
aatcaatcaaaggatcatcaaccaagtgtaacaagggtatcaaataacttaacatcccag
gttctaccaagttctctagaggagacagatgggaaggaaacagctaaagaaccttctcag
cctccaaaagcagtgaaggaagtagatatgtctggttctgttcaactgaaaaagaatgag
ccttgtgatgccgctgcatcaaagccagtgggagagctatctgaaccagcaaatgcatca
gaaaatctagagacagcttcctgctctccatccagatcaaagaatgagcaaaaaactgtt
aaaccaatctctgatggggaatctacggagcctgcagatgcatcagatgatgttcaactg
ttgtctgtttcacaaccatctgaaaggagtgaacctccacagccagtcacatcgaattca
gtaaatgaaaatggagtaacgacagacaagatcgaagaaggtaaaagcaagaaccatgac
tctacagagagagaagataatagtagcattgataaattaaagagagctgcagttacagca
ctctcagcagcagcagtgaaggcaaaacttctagcagaccaggaagaggaccaaatccga
caacttaccacatcattaatagaaaagcagttacataagatggaagccaaattatctttc
ttcaatgagatggagggagtcgtaatgagggtgaaggagcaattggacaggtcaaggcaa
aggctttaccatgagcgaacgcagataattgctgctcgactgggcttaccagcttcctcc
tctagagcaatgccgccaccaaatgctgcaaatagagttgcaacaaactttgcaaactcg
gttgcaaggcctccaatgagcatgaaagccccaagaccaccattgtcgagacccatgggt
tctatgacccctaccccttccaacccatatgtatccaatacagttgcagggagttcaatt
cgacctggtagccaagacaatctttcctccgttggaaccaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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