KEGG   Gossypium hirsutum (upland cotton): 107900472Help
Entry
107900472         CDS       T04793                                 

Definition
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
  KO
K03283  heat shock 70kDa protein 1/2/6/8
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
ghi04141  Protein processing in endoplasmic reticulum
ghi04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107900472
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    107900472
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    107900472
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ghi01009]
    107900472
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107900472
   03009 Ribosome biogenesis [BR:ghi03009]
    107900472
   03110 Chaperones and folding catalysts [BR:ghi03110]
    107900472
   04131 Membrane trafficking [BR:ghi04131]
    107900472
   03051 Proteasome [BR:ghi03051]
    107900472
   03029 Mitochondrial biogenesis [BR:ghi03029]
    107900472
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ghi04147]
    107900472
Protein phosphatases and associated proteins [BR:ghi01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     107900472
Spliceosome [BR:ghi03041]
 Complex B
  Other components
   Prp19 complex
    107900472
 Complex C
   Prp19-CDC5 complex
    107900472
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    107900472
Chaperones and folding catalysts [BR:ghi03110]
 Heat shock proteins
  HSP70 / DNAK
   107900472
Membrane trafficking [BR:ghi04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    107900472
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    107900472
Proteasome [BR:ghi03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    107900472
Mitochondrial biogenesis [BR:ghi03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    107900472
Exosome [BR:ghi04147]
 Exosomal proteins
  Proteins found in most exosomes
   107900472
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HSP70 MreB_Mbl FGGY_C Hydantoinase_A
Motif
Other DBs
NCBI-GeneID: 107900472
NCBI-ProteinID: XP_016681571
UniProt: D2D322
Position
18
AA seq 648 aa AA seqDB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRYSDSSVQSDMKLWPFKVIAGPGDKPMIVVTYKGEEKQFAA
EEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKK
KVEAKNSLENYAYNMRNTIKDEKIGSKLDPADKKKIEDAIDGAIQWLDGNQLAEADEFED
KMKELESICNPIIAKMYQGAGADMGGGMDEDAPPTGGSGAGPKIEEVD
NT seq 1947 nt NT seq  +upstreamnt  +downstreamnt
atggccggaaaaggagaaggaccggcgatcggtatagatctcggcacgacttactcttgc
gttggagtatggcaacatgaccgagttgaaatcatcgccaacgaccaaggcaaccgtacg
acgccgtcctacgttgctttcaccgattccgagcgtttaatcggtgatgccgctaagaac
caagtcgccatgaatccgatcaacaccgtcttcgatgctaagcgattaatcggcagaaga
tatagcgattcgtcggttcaaagcgatatgaagctttggccttttaaggtaatcgccggt
cctggtgacaagcccatgattgttgttacttacaagggcgaggaaaaacaatttgctgcc
gaggaaatctcatctatggttttaatcaagatgcgtgaaatcgccgaggcttatctcgga
gcgacgattaagaacgctgtcgttactgtcccagcttatttcaatgactcccaaaggcaa
gctaccaaagatgccggagtcattgctggtcttaacgttatgcgaattatcaacgagcca
acagccgccgccattgcttacggtcttgacaagaaagccaccagtgttggtgaaaagaat
gtgttgattttcgatttgggtggtggtacttttgatgtttcattgcttactattgaagaa
ggtatctttgaagttaaggccactgctggtgatacacatttgggtggtgaggattttgat
aataggatggttaaccatttcgttcaagaatttaagaggaagaataagaaggatattagt
gggaaccccagagcattgaggaggttgaggactgcttgtgagagagcaaagaggactctt
tcatcgactgctcaaactaccatcgagatcgattcattgtacgagggtattgacttttac
accacgataactcgtgcaaggtttgaggagcttaacatggatctttttaggaagtgtatg
gagccagttgagaagtgtttgagggatgctaagatggataagagcagtgtccatgatgtt
gttcttgttggtggttccactcgtattcctaaagtgcagcagttgttgcaagacttcttc
aacgggaaggagctctgcaagagcattaatcctgatgaggccgttgcttatggtgctgcg
gttcaggctgctatcttgagtggtgaaggaaatgagaaggttcaggatctattgcttttg
gatgtcactcctttgtcccttggactcgaaactgctggcggtgttatgactgttttgatt
ccgagaaacactaccattcccaccaagaaggagcaggtgttttcaacttactctgataac
caacccggtgtcttgatccaagtttatgagggtgagagagctcgaacccgggacaacaat
ttgttgggtaaattcgagctctctggcattccaccagcacccagaggcgttccccaaatt
acagtttgcttcgacattgatgctaatggcatcttgaatgtctctgccgaggacaagact
actggccagaagaacaagattaccataacaaatgataagggtcggttgtcgaaggaagaa
atcgagaagatggttcaagaagccgagaagtacaagtccgaggatgaggagcacaagaag
aaggttgaagccaagaattcattggagaactatgcctacaacatgaggaatactatcaag
gatgagaagattggttcaaagcttgacccggctgacaagaagaagattgaagatgccatt
gatggagcaatccaatggttggatggcaaccagctagccgaggctgatgaattcgaggat
aagatgaaggagctcgagagcatctgcaatcctatcattgccaagatgtaccaaggtgca
ggggctgacatgggtggtggcatggacgaggatgccccacctaccggtggcagcggtgct
ggacctaagatagaagaagtcgactaa

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