KEGG   Gossypium hirsutum (upland cotton): 107905087
Entry
107905087         CDS       T04793                                 
Name
(RefSeq) serine--tRNA ligase, chloroplastic/mitochondrial isoform X1
  KO
K01875  seryl-tRNA synthetase [EC:6.1.1.11]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi00970  Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   00970 Aminoacyl-tRNA biosynthesis
    107905087
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01007 Amino acid related enzymes [BR:ghi01007]
    107905087
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ghi03016]
    107905087
Enzymes [BR:ghi01000]
 6. Ligases
  6.1  Forming carbon-oxygen bonds
   6.1.1  Ligases forming aminoacyl-tRNA and related compounds
    6.1.1.11  serine---tRNA ligase
     107905087
Amino acid related enzymes [BR:ghi01007]
 Aminoacyl-tRNA synthetase
  Class II (C/G)
   107905087
Transfer RNA biogenesis [BR:ghi03016]
 Eukaryotic type
  Aminoacyl-tRNA synthetases (AARSs)
   Other AARSs
    107905087
 Prokaryotic type
    107905087
SSDB
Motif
Pfam: tRNA-synt_2b Seryl_tRNA_N CCDC-167 TPX2 DUF724
Other DBs
NCBI-GeneID: 107905087
NCBI-ProteinID: XP_040950203
Position
D05:complement(20529756..20533114)
AA seq 523 aa
MALQCRLSGATFQSLKLATIPISSSSSRFIFRTLPKTLNLALFSRHSAPKAPPFSVLIRN
LSAPAVAAAPAAETSDIKVVKPQWNAAIDFKWIRDNKEAVAVNIKNRNSNANLELVLQLY
DKMLNLQKEVERLRGERNNVANKMKGKLEPSERQKLIEEGKNLKEALTTLEEDLVKLRDE
LQIEAQCIPNLTHPDVPIGWEDSSKLRNMVGSPRKFDFPIKDHLQIGKELDLFDFDAAAE
VSGSKFYYLKNEAVMLEMALVNWTLTEVMKRGFTPLTTPEIVRSSVVEKCGFQPRGENTQ
VYSIEDSDQCLIGTAEIPVGGIHMDSIVAESALPLKYVAFSHCFRTEAGAAGTATRGLYR
VHQFSKVEMFILCRQEESDMYHEELIKIEEDLFSSLGLHFKILDMATGDLGAPAYRKFDV
EAWMPGLERYGEISSASNCTDYQSRRLGIRYRPSESPSTTSKKGKTNLAATKFVHTLNAT
ACAIPRMLVCLLENFQQEDGSVIIPHPLRPFMGGVEAIYPKSR
NT seq 1572 nt   +upstreamnt  +downstreamnt
atggcgttacagtgtcgtttaagcggggcgacgttccaatccctaaaattggcgacgatt
ccaatctcatcttcatcgtcgcgcttcatcttccgaacacttcctaaaaccctaaacctc
gctttattttcccgccattctgctccaaaagcgcctcccttttctgttctcattagaaac
ctttcagctccggctgtggctgctgctcccgccgcagaaacctctgatattaaagttgta
aagccccagtggaatgcggcaatagatttcaagtggataagggataataaagaagccgtt
gccgttaatattaagaataggaattccaatgcaaatttggagcttgtgcttcaactttat
gataaaatgttgaatcttcaaaaggaagttgagcggcttcgaggggaaaggaataatgtt
gccaataagatgaaaggcaaattggagccttctgagcgtcaaaagctcatagaagaagga
aagaatctgaaggaagcacttacgactttggaagaagaccttgtcaaattaagagacgag
cttcagatagaagcgcaatgtataccgaatctaactcacccggacgttccaattggatgg
gaagatagttcaaagttgaggaatatggttggaagccctcgtaaatttgacttccctatt
aaggatcaccttcaaatcggaaaggaactagatctctttgattttgatgctgctgcagag
gtaagtggttcaaaattctattacctaaagaatgaagcagtgatgctggaaatggccctt
gtcaactggacactgacagaagtcatgaaaaggggctttacaccattgacaacaccagaa
attgtcaggtcatctgttgtcgaaaaatgtggattccagccccgtggagaaaatacgcag
gtttattccattgaggatagtgaccagtgcctcattggcactgcagagattcctgtaggg
ggaattcatatggactctattgttgctgagtctgcattacccttaaaatatgtggcattt
tctcattgttttcgtactgaagctggtgctgctggtacagcaaccaggggtctctatagg
gtacatcaatttagcaaggtggaaatgtttattttatgcagacaagaagaaagtgatatg
taccatgaggaacttattaaaattgaagaggaccttttttcgtctctaggattgcatttc
aaaattttagatatggctacaggggacttgggtgctcctgcttatcgtaaatttgatgtg
gaggcatggatgccaggtttagaacgctatggcgagatatcaagtgcatcgaattgtacc
gactatcagagccgccggcttggcattcgttatcgtccatcggaatcaccctcaacaact
tccaagaagggtaaaacaaacctggctgcaaccaaatttgttcatacattaaatgcaact
gcttgtgcaattccaaggatgcttgtatgtttgctggagaattttcagcaagaagatggg
tctgttattattccacatccattaaggccattcatgggtggggttgaagctatatatcct
aaatctaggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (8)   
   KEGG COMPOUND (8)   
Chemical reaction (3)   
   KEGG ENZYME (1)   
   KEGG REACTION (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system