KEGG   Gossypium hirsutum (upland cotton): 107908640
Entry
107908640         CDS       T04793                                 
Name
(RefSeq) transportin-1 isoform X1
  KO
K18752  transportin-1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    107908640
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107908640
   03009 Ribosome biogenesis [BR:ghi03009]
    107908640
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     107908640
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Pre-40S particles
   Export and cytoplasmic maturation factors
    107908640
  Pre-60S particles
    107908640
SSDB
Motif
Pfam: HEAT_EZ HEAT HEAT_2 IBN_N CLASP_N Htt_N-HEAT_1 Arm Maestro_HEAT DUF3437 Nipped-B_C
Other DBs
NCBI-GeneID: 107908640
NCBI-ProteinID: XP_016691356
UniProt: A0A1U8JM63
Position
D02:71318436..71327739
AA seq 888 aa
MRRTITRLGPWQPHDEGLNQIILLLLLDNLPFSTVIRVQIRMQLLHFSLFDDFNNYLAFI
LSRAKDVPVEIRKVAGLLLKNGLMDVYNLIEPEHQQYIKLQLLYGLGEADQHIRSTCGTT
ISNVVQQGGISGWPELFHTLLHFLNSGDPNRNGGAMDALSKISENTPELLDSDDAWSGQR
PINIFLLELFEFFHSPHANLRKLSLRFVNKYIISMPSGLYTSKNKYLDGLFLLANEPDAA
VRKLVCTALLQLVEFHPSVLEPRLKDVIECMLQLNKDNNDVLALEACGFWSKYWDAQIPP
ENLREYLPHLTLILLSNMAYPNDDDLLADAEVIDAKEDESIPDRYQDLKPQLPCSDEDDD
TCTICNLRKCSASALDVLSNVFGAKILLTFMPIIEANLSATGDEAWRDKEAAVLALGVIA
RGCINGLYPRLSEIVASLIPLLDHKFTLIRSTSCWTLSQFSKYIVQDSGNKKGYEQFDMV
LTAFLQRISDTNKLVQGAACSALAILEEEAAEKLAPRLKEILQHLMHPLGEYQKRNLRII
CDAIGTLVDAVGEELDQPVYVEILIPPLIQKWQNFSIFDKDLLTLLECFTSIVQALRSIE
FSQFTEHLFSRCITIIEAQQQLAKAHPFSDKDFITCSLDFLSGLTGCFHNGIESLVLQSN
LRDMLLKCCRDGAPDVRQSAFGLLGDLARVCPIHLHPRVPEFLYLVVKQLKIPKFEKTIS
VANNACWAIGELAVQVPQEISPFVATVISCLIPILHQSEGVVKSMVENSAITLGRLAFVC
PDLVSPHMEKCMQSWCISLSTTRDGIEKEDAFKGLCAMVKANPSVAQSSLVYVCKAIASW
TKIWSTELNTEVCKVMHDYQQMLTNEAWDKFMSDLDPLVKANIAKYLV
NT seq 2667 nt   +upstreamnt  +downstreamnt
atgagaaggacgataactcggcttgggccatggcagccacacgacgaggggttgaaccaa
ataattctcctgttgctgctggataatttgccgttttctacggttattagggttcagatt
cggatgcagcttctgcatttctctttgttcgatgatttcaacaactatcttgcttttatc
ctttcaagagctaaggatgtacctgtagagattcgaaaagttgctggtctgctgctgaaa
aatgggctaatggatgtatacaatttgatagagcctgaacaccaacaatatataaaatta
caactgttatatggtttaggagaagcagatcaacacattaggtcaacttgtgggacgact
atatcaaatgttgttcaacaagggggaatttcgggatggcctgaactgtttcatactctt
ctacatttccttaatagtggtgatccaaatagaaatggaggtgctatggatgcattatca
aagatctctgagaatacacccgaattgttggattctgatgacgcttggtcaggtcaaagg
cccatcaacatattccttcttgaattgtttgagttttttcattcgccacatgctaacttg
agaaagctttcattgcgttttgtaaacaaatacattatctctatgccttctgggctatac
acatccaaaaataaataccttgatggtttgtttctccttgccaatgagccagatgcagca
gtgcggaaattggtttgtactgcattgcttcagctagttgaattccatccatctgttcta
gagccccgtctgaaggatgtaattgaatgtatgttacaactcaataaggacaacaatgat
gtactggcacttgaagcatgtggattttggtctaaatattgggatgcacagataccacct
gagaatttgagagaatatttgccacatttaactctaattttgttgtcaaacatggcttac
cctaatgatgatgatttacttgctgatgcagaggttattgatgctaaggaagacgagtct
attccagacagatatcaggatctgaaacctcaacttccttgttctgatgaagatgatgac
acttgtaccatctgtaacttacggaaatgcagtgcctcagctcttgatgttctatcaaat
gtgtttggagctaaaattcttcttacattcatgcctattatcgaggcaaacttatctgct
actggtgatgaagcctggagggacaaggaagctgctgttctggctcttggtgtaatcgct
cgaggttgcatcaatggtctttatcctcgtttgtctgagattgtggcatctctaattccc
cttttagatcataagtttactctcataaggagtacttcttgttggacactttctcaattc
agcaaatacattgttcaggatagtggtaataaaaaaggctatgagcaatttgacatggtt
cttacggctttcctgcaaagaatatcggatactaacaagctggtacaaggggctgcttgt
tctgctcttgcaatacttgaagaggaggctgccgaaaagttggcacctaggttgaaagaa
atattacagcatcttatgcatcctttgggcgagtatcagaaacggaacctgagaattatt
tgtgatgctatcggaactctagtagatgctgttggagaggaattggatcagcctgtttat
gttgaaattctgattccaccactcattcaaaagtggcaaaatttttcaatttttgacaaa
gatctcttaacacttcttgagtgcttcacatccatcgtgcaggcattgcgtagcatcgaa
ttctctcagtttactgagcatttattcagtaggtgcataactatcatcgaggctcaacaa
cagttggccaaggctcatcctttttcagataaggacttcattacatgttcgcttgatttt
ctatctggactaacagggtgctttcataatggaatagagagtttggttttacaaagcaat
ttgagggacatgcttctgaaatgttgcagggatggtgctcctgatgttcgacaaagtgcc
tttggtcttctaggggacctagcaagagtttgtcctattcatttgcatcctcgtgtacct
gagttcctttatctggtggtgaagcaattgaagattcccaagttcgagaaaaccatttca
gtagcaaacaatgcatgttgggctatcggagagctagccgttcaggttcctcaagaaatt
tctccgtttgtcgcaacagtgatctcgtgtttgattccaatccttcatcaatcagagggg
gtggtgaagtcaatggttgaaaatagtgccattactctagggaggcttgcatttgtctgt
ccagatcttgtgtcgccacacatggagaagtgcatgcaatcgtggtgcatttctttatct
actacacgtgacggtatcgagaaagaagatgccttcaaaggtctttgtgcaatggtcaag
gcaaatccttcagttgctcagagttcgcttgtttacgtatgcaaagctattgcaagctgg
acaaaaatatggagcacagaactgaatacagaagtttgcaaggtcatgcatgattatcaa
cagatgcttactaacgaggcatgggacaaatttatgtccgatttggatccactcgtgaag
gctaatattgcgaagtatctagtttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (10)   
   Pfam (10)   
All databases (36)   

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