KEGG   Gossypium hirsutum (upland cotton): 107912591
Entry
107912591         CDS       T04793                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107912591
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107912591
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107912591
   03041 Spliceosome [BR:ghi03041]
    107912591
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107912591
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107912591
Spliceosome [BR:ghi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107912591
SSDB
Motif
Pfam: LSM Ntox4
Other DBs
NCBI-GeneID: 107912591
NCBI-ProteinID: XP_016696324
UniProt: A0A1U8P5R9
Position
D11:complement(14284551..14286313)
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITTEGR
RITKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggcaaacaatccctcgcagcttcttccgtcagagttgatagataggtgcatagggtcc
aaaatatgggtgataatgaaaggggacaaggagctcgtgggtactcttagaggcttcgat
gtttacgtcaacatggtcctcgaagatgtcactgaatatgagatcaccactgaaggaaga
cggatcacaaagcttgatcaaattttgcttaatggaaacaacatcgccattttggtccca
ggaggctcacctgatcccgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

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