KEGG   Gossypium hirsutum (upland cotton): 107912600
Entry
107912600         CDS       T04793                                 
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    107912600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ghi04131]
    107912600
Membrane trafficking [BR:ghi04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    107912600
   Hops complex
    107912600
SSDB
Motif
Pfam: Clathrin VPS11_C zf-C3H2C3 TPR_16 zf-C3HC4_2 zf-RING_5 OCRL_clath_bd DBD_Tnp_Mut
Other DBs
NCBI-GeneID: 107912600
NCBI-ProteinID: XP_016696333
UniProt: A0A1U8K5T4
Position
D11:16096690..16101443
AA seq 953 aa
MYQWRKFEFFEEKLGGGKCKIPEEISGKIECASSGRGKLVIGCDDGTVSLLDRGLNFNFG
FQAHSSSALFLQMLKQRNFLVSIGEDEQISPQQSGMCLKVFDLDKMQPEGSSTTSPDCIG
ILRIFTNQFPQAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDSS
SGEGNSSVTGLGFRLDGQALLLFAVTPNSVSLFSMQNQPPRRQLLDQIGCNVNSVAMSDR
SELIIGRPEAVYFYEVDGRGPCWAFEGEKKFLGWYRGYLLCVIADQRNGKNTFNIYDLKN
RLIAHSLVVKEVSHMLCEWGNIILIMTDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQ
TQQADASATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTN
YLENLHEKGLASKDHTTLLLNCYTKLKDVEKLNVFIKSEDGVGEHKFDVETAIRVCRAAN
YHEHAMYVAKKAGRHEWYLKILLEDLGRYDEALQYISSLEPSQAGVTVKEYGKILIEHKP
AETINILMRLCTEDIELAKRVTSNGGYLSMLPSPVDFLNIFIHHPQSLMDFLEKYTDKVK
DSPAQVEIHNTLLELYLSIDLNFPSISQVNNGTDFNIKARTAPNGKLAVDGKNLSIEKDT
LERREKGLHLLKSAWPADLEHPLYDVDLAIILCEMNAFKEGLLYLYEKMKLFKEVIACYM
QVHDHEGLIACCKRLGDSGKGGDPTLWADLLKYFGELGEDCSKEVKEVLTYIERDDILPP
IIVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEEDRRAIEKYQEDTMAMRKEIQDLRTN
ARIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECAPEYRSVMEMKRSLEQ
NSKDQDQFFQQVKSSKDGFSVIAEYFGKGVISKTSNGSTGTARSDSISSSSGF
NT seq 2862 nt   +upstreamnt  +downstreamnt
atgtatcagtggaggaaattcgagttcttcgaggagaaattgggaggaggcaaatgcaaa
atcccggaggaaatcagtggaaaaatcgagtgtgcttccagcggaagaggaaagctcgtg
atcggctgcgatgacggcactgtaagcctcctggatcgcggccttaacttcaatttcggc
ttccaagctcattcttcctccgctctcttcctccaaatgctcaagcaacggaattttttg
gtgagtattggagaagatgaacaaatatcacctcagcaatcagggatgtgcttgaaggta
ttcgatcttgataaaatgcagccggaaggatcaagtaccactagtcctgattgtattgga
attttgcgtattttcaccaatcaattccctcaagctaagatcacatcatttctagtctta
gaggaagctccgccgatattacttatagctattgggttagacaatggttgcatttactgt
atcaagggagatattgcacgtgagagaataacccgattcaagctccaggtcgatagctca
tctggtgaagggaattcatcagttactggactaggttttagactggatggtcaagccctt
ctattatttgctgtaactccaaattctgtgagtttattcagcatgcagaaccaacctcct
aggcggcaattattagatcagatcggatgcaatgtcaatagtgtcgcaatgagtgaccgc
tcggagttgataattggtcgacctgaggccgtgtatttttatgaagtagatgggcgtggt
ccctgttgggcttttgaaggagagaagaagttcttagggtggtatcgtggatatttatta
tgtgttattgctgatcaaagaaatggaaagaataccttcaatatttatgacctgaagaac
cggttaatagcacacagtctagttgttaaagaagtttctcacatgctttgtgaatggggc
aacataatacttataatgactgacaaatcagctttatgtattggtgagaaggatatggaa
agcaagttagatatgctctttaagaagaacctttacactgtagctatcaacctggttcaa
acacagcaagctgatgcttctgcaactgctgaagtactgaggaagtatggtgatcatctt
tatagcaagcaagactatgatgaggctatggcacagtacattcacaccattggtcacctt
gaaccttcatatgtaatacaaaagtttctggatgcgcaaagaatctacaaccttacaaat
tacttggaaaatttacatgagaaggggctcgcctctaaagatcacaccacccttctgtta
aactgctatactaaattgaaagatgttgaaaagttgaatgtgttcattaagagtgaggat
ggtgttggggaacataaattcgatgtggagactgctataagggtttgccgagcagcaaat
taccatgaacatgccatgtatgttgctaagaaggctggtcgccatgaatggtacttaaag
attttgcttgaagaccttggcagatatgatgaagctttgcaatatatctctagccttgaa
ccaagtcaagctggggtgacagtgaaggaatatgggaagattctcatagagcacaaaccg
gcagagacaattaatatacttatgaggctgtgcactgaggatatagagttggctaaacgt
gtaacttcaaatggtggttacttatctatgttaccatctcctgttgatttcctcaacatt
ttcatccatcatccacaatctcttatggatttccttgaaaaatatactgacaaggtaaaa
gattctcctgctcaagtagagattcacaacacactcttggagttgtacctgtccattgat
ttgaacttcccatcaatctcccaagttaacaatggaacggattttaatattaaagcaaga
acagcgcccaacgggaagttagcagttgatggtaagaatttatctatagaaaaggacacg
ctggaaagacgtgaaaaggggctacatttgcttaagagtgcatggccagctgacctggaa
catccactttatgatgttgatcttgctatcatcctatgcgagatgaatgcatttaaagaa
ggcttattgtatctctatgagaaaatgaaactttttaaagaagtgattgcttgctacatg
caagtccatgaccatgagggattgattgcatgttgcaaaaggctaggggattctggtaaa
ggaggggaccctactctatgggcagatcttctgaagtattttggtgaacttggggaagat
tgctctaaagaagtgaaagaagtattgacatatattgagagggatgacatcttgcctccc
attattgttctccagacactttccaggaacccatgtctcacattatctgttattaaggat
tacattgcccgaaaacttgaacaagagtcaaagctgattgaagaggacagacgagctata
gagaagtatcaggaagacacaatggcaatgagaaaagaaattcaggaccttaggacaaac
gccaggatatttcagctgagcaagtgcactgcttgcacttttacccttgacctacctgct
gtgcacttcatgtgtatgcactcatttcatcagcgttgccttggtgataatgaaaaggaa
tgccctgagtgtgctccagagtacagatctgtaatggaaatgaaaagaagcttggaacag
aattcaaaagatcaagatcaattcttccaacaagtcaagagctcaaaggatggattttcc
gtgattgctgaatattttgggaagggggtcattagtaaaactagtaatggttccacagga
actgctagatcagacagcatctcttccagcagtggcttctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (8)   
   Pfam (8)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system