KEGG   Gossypium hirsutum (upland cotton): 107913059
Entry
107913059         CDS       T04793                                 
Name
(RefSeq) plant-specific TFIIB-related protein 1 isoform X1
  KO
K03124  transcription initiation factor TFIIB
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107913059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107913059
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIB
     107913059
 Prokaryotic type
  Archaeal type
    TFB
     107913059
SSDB
Motif
Pfam: TFIIB TF_Zn_Ribbon Cyclin_C HTH_Mga zf-UBP
Other DBs
NCBI-GeneID: 107913059
NCBI-ProteinID: XP_016696991
UniProt: A0A1U8K371
Position
D11:complement(22569155..22572340)
AA seq 528 aa
MKCPYCSAAQGRCATTSTGRSITECTSCGRVVEERQFQNHHLFHVRAQDTPLCLVTSDIP
APASAYQIDEDDPFEPTGFITAFSTWSLEPNPLFLRSSLSFSGHLAELERILELSSSSAP
SATSSSTVVVDNLRAYMQILDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATA
ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT
LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTIATGRSSVPRVDSIDLSSTADR
DKQQDSKPIKPNDVSEAGLQARGKDDAENNGNSSGTHAAMLNRPPHFRQPWLQFGAPNVR
TVGDKNQTTIGGDISEAQPSCPESEQKVDMPKIDTKGASSSLRPSQFSSSPAANVSTITW
PFRSPVSSGPSPNMPIVHPPKLPPGFAELKGSGTQNGSKVTNPSGDSK
NT seq 1587 nt   +upstreamnt  +downstreamnt
atgaagtgtccgtattgctcggcggcgcaaggtcggtgcgccaccacgtcaaccggccgg
tccataacggagtgcacctcttgcggacgtgtcgtcgaagagcgccaattccaaaaccac
cacctctttcacgtgcgtgcccaagatacccctctctgcctcgtcacctccgacatccct
gctcccgcttccgcttaccaaatcgacgaagacgacccctttgagcccacgggatttatt
acggccttttccacatggtccctcgaacccaacccactcttcctccgctcctctctctcc
ttttcgggccacctggcggagctcgagcggattctagaactctcttcgtcttcagcccct
tcggcaacttcgtcttcgacggttgtggtggataatttgagagcgtatatgcagattctt
gacgtggcgtcgattttggggttggattgtgatatatcggatcacgcgtttcagttgttt
agggattgttgttcggctacctgtttgaggaaccggagtgttgaggcgcttgctactgct
gctcttgttcaggccattagggaagctcaagagcctcgaaccctccaggaaatctctatt
gctgccaatgtaccacagaaagagattggcaagtacatcaagatcctgggagaagcttta
caattaagtcaacctatcaatagtaattctatatcagttcatatgccgagattttgcact
ctccttcagctcaataaatctgcacaggagctggcaactcatatcggagaagttgtgatc
aacaaatgcttttgcactcgccgaaatccgattagtatatctgcagctgctatatatctg
gcatgccaattagaagacaaacggaagacgcaggctgagatatgtaaggtgacaggtctc
acagaagtcaccctccgaaaagtctacaaggaactattagagaattgggatgatctactt
ccgtctaattatactccagctgtccctcccgagaaagcatttcctacaactacaattgcc
acgggccgatcttcagtgcctagagttgattcaattgatctgagttctacagcggaccga
gataagcagcaagactcaaagccaattaagcctaatgacgtgtcagaagcaggccttcaa
gctagaggcaaagatgatgcagaaaacaatggaaattcttctggaacccatgctgctatg
ttgaaccggccaccacatttcaggcagccctggcttcagtttggggctcccaatgttagg
acagtaggagataaaaaccagactaccattggaggagacattagcgaagcacaaccaagc
tgtccagagtcagaacagaaagtagatatgccaaagatagataccaagggtgctagtagt
tccctaaggcccagccaattctcaagctctcctgctgcaaatgtgagtaccatcacttgg
ccatttcgttcgccagtctcatcagggccttcgccaaatatgcctattgtgcatcctcca
aagttgccaccaggttttgctgagcttaaaggatccgggactcaaaatggaagtaaagtt
accaatccgagtggagattccaagtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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