KEGG   Gossypium hirsutum (upland cotton): 107916365
Entry
107916365         CDS       T04793                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107916365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107916365
   03009 Ribosome biogenesis [BR:ghi03009]
    107916365
Enzymes [BR:ghi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     107916365
Spliceosome [BR:ghi03041]
 Complex A
  U1 snRNP components
   U1 related factors
    107916365
 Complex B
    107916365
Ribosome biogenesis [BR:ghi03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    107916365
SSDB
Motif
Pfam: DEAD Helicase_C ResIII
Other DBs
NCBI-GeneID: 107916365
NCBI-ProteinID: XP_016701120
UniProt: A0A1U8KF58
Position
D10:6072889..6078994
AA seq 505 aa
MSRYDSRSGDPTSYRDRRSDSGFGGASAYGGSGRSLSSRKDYDAAEPPRKLDLDGLTPFE
KNFYVESPSVAAMSEMEVEEYRQRREITVEGRDVPKPVKSFADVGFPDYVLQEVSKAGFV
EPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLDSH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSADLKANHAICQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILKEAGQKVSPELAAMGRG
APPPPSGHGGFRDRGKGYGGTRPWN
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgagtcgatatgatagccgctccggcgatcccacctcctaccgtgaccgtagaagtgac
tcagggtttggtggggcttcagcatatggtggttcagggcggtccttgtcaagcagaaag
gactatgatgctgctgaaccacctaggaagttggatttggatggcttgacaccatttgaa
aagaatttttatgttgaatctccttctgtggcggcaatgtctgagatggaggtggaggaa
tatcggcagcggagggaaattacagttgaaggtcgtgatgttccaaagcctgtgaagagt
tttgctgatgtgggatttccagactatgtactgcaagaagtctcgaaagcagggtttgtt
gaaccaacagccatacaagctcaaggctggccaatggctttaaagggtcgtgatcttatt
ggtattgctgaaacaggatcagggaagactcttgcctatttattgcctgcaattgttcat
gtcaacgcacagccaattttagctcctggagatggtccaattgtattagtattagctccc
acacgtgaacttgcggttcaaatacaacaggaggctgctaagtttggtgcgtcatcaagg
atcaagaatacatgcatatatggtggggttccaaagggacctcaagtgcgtgatctccag
aaaggtgttgagattgttattgctacaccaggaaggttaatagatatgttggattcacat
cacacaaatttgcgaagagttacttatttagtcttggatgaggcagatcggatgttagat
atggggtttgagcctcagatacgaaaaattgtttctcagatccgtcctgatcgtcaaact
ttatactggagtgcaacttggccaaaggaggttgaacaattggcaaggcagtttctttac
aatccgtacaaagtgataattggatctgcggatttaaaagctaaccatgcaatttgccaa
catgttgacattgtttcggagagtcagaaatataacaaattggtgaagctgctggaggat
atcatggatggcagcagaattttgattttcatggataccaagaaaggctgtgaccaaatc
accaggcaacttcgcatggatggttggccggctctctcaattcatggagataaaagtcaa
gcagaaagggattgggtcctttcagagtttaaagctggcaagagccctataatgactgca
acagatgttgcagctcgtggcttagatgtgaaagatgtcaaatatgtaatcaattatgac
ttcccgggttctcttgaggattatgttcatcgcattggtcgaactggaagggcgggggca
aaaggaactgcctacactttcttcacagctgcaaatgccagatttgcaaaagaacttatt
gccatacttaaggaagctggacaaaaggtcagtcctgaattggcagcaatgggacgtggt
gcacctcctcccccatcaggacatggtggtttccgagaccgaggtaaaggttatgggggc
acccgcccttggaattga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (18)   

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