KEGG   Gossypium hirsutum (upland cotton): 107918142
Entry
107918142         CDS       T04793                                 
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X2
  KO
K18195  rhamnogalacturonan endolyase [EC:4.2.2.23]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09190 Not Included in Pathway or Brite
  09191 Unclassified: metabolism
   99980 Enzymes with EC numbers
    107918142
Enzymes [BR:ghi01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.2  Acting on polysaccharides
    4.2.2.23  rhamnogalacturonan endolyase
     107918142
SSDB
Motif
Pfam: Rhamnogal_lyase CBM-like fn3_3 CarboxypepD_reg
Other DBs
NCBI-GeneID: 107918142
NCBI-ProteinID: XP_016703160
UniProt: A0A1U8KR11
Position
A01:33826293..33830924
AA seq 644 aa
MPSQGVKLYVQDKHVVLDNGILQVTISNPDGILTAIQYNGIDNLLAVENQEADRGYWDLV
WNLAGSKGTKGKFDRIEATSFEVIVENEDQVELSFTRTWNPSLEGKVVPLNIEKRFIMLR
NSSGFYTYAIYEHLKEWPAFNLDRFRVAFKLRKDKFHYMAMADNRQRYMPLPDDRLPYRS
QTLAYPEAVLLVDPMETEFRGEVDDKYQYSCENKDNRVHGWICNDPPVGFWQITPSDEFR
SAGPHKQNLTSHVGPTTLAVMHSVHYSGEDLILKFGSNEAWKKVFGPIFIYLNSLSDAGG
NPLSLWEDAKQQMRIEVQDWPYTFPASQDFPQSHQRGNVSGRLLVKDRYVCKDYIPANGA
YVGLAPPGDVGSWQSEVKGYQFWTRADEDGYFCINNIWTGDYNLYAWVPGFIGDYKYDVI
ITPSAGYDIFMGDLVYEPPRDGPTLWEIGVPDRTAAEFYVPDPSPMFVNRLYVNHPDRFR
QYGLWERYADLYPDRDLVYTVGVSDYTKDWFFAQVTRKNDDNTYQGTTWQIKFKLDCAAN
ETETYKLRLALATAHAAELQVRVNDDGKSPLFSSGQIGKDNTIARHGIHGLYRLYHVGIP
GNLLLEGDNTIFLTQPKSTSPFQGIMYDYIRLEGPASSNGNKKP
NT seq 1935 nt   +upstreamnt  +downstreamnt
atgccatctcagggagtgaagttatatgtccaagataaacatgtggtcttggataatggt
atactgcaggtcacaatatctaatccagatggcattctcactgctattcaatataatggc
attgacaatttgcttgctgttgaaaaccaggaagctgatagagggtattgggacctcgtc
tggaatctagcaggaagcaaaggaacaaagggtaaatttgacaggattgaagcaacaagt
tttgaagtaatagtggaaaatgaggatcaggtggagctttcatttactagaacatggaat
ccttcccttgaaggcaaagtcgttcccttgaacatcgagaagaggtttataatgcttcgt
aattcctcaggattctacacctatgcaatttacgagcacttgaaggaatggcctgctttc
aaccttgacaggttcagggttgcattcaagttgaggaaagacaagtttcattacatggca
atggcagacaacagacaaagatacatgcccttgcctgatgaccgtttaccttacagaagc
caaaccttggcttatccagaggctgtcctactggttgatccaatggaaactgagtttaga
ggagaggttgatgacaagtaccagtattcatgcgagaacaaggacaacagggtccatgga
tggatttgcaatgacccgccggtggggttctggcaaataactcctagtgatgagtttcga
tctgccgggcctcacaagcaaaaccttacctctcacgtcggcccgaccacccttgccgtt
atgcacagtgttcattattcaggagaggatttgatattgaaatttggaagtaatgaggct
tggaagaaagtttttggccccatttttatttatcttaattctttgtcggatgctggaggt
aacccactttcactttgggaagatgctaaacaacagatgagaattgaagttcaagactgg
ccctatactttccctgcttctcaagactttccacaatcccatcaaaggggcaatgtcagt
ggtagattactagtgaaagacagatatgtttgcaaagactacatacctgccaatggtgcc
tatgtggggttagcaccccctggagatgttggatcttggcagagtgaagtcaagggctat
caattctggactagagctgatgaagatggctatttctgcattaacaatatttggaccggt
gactataatctatatgcatgggttcctggtttcattggtgattataaatatgatgttatc
atcacccctagcgcagggtatgatatattcatgggtgatcttgtatatgaaccgccaaga
gatggccctacattgtgggaaattggagtcccggatcgcactgctgcagaattctacgtt
cctgatccgagtccgatgtttgtcaacaggttatatgttaaccatcctgacagatttagg
cagtatgggttatgggaaagatatgcagatttatatcctgatagagatttggtttacaca
gttggggttagtgactatacaaaagactggttttttgctcaggtcaccagaaagaatgat
gacaacacatatcaaggaactacatggcaaatcaagttcaaactagattgtgctgcaaat
gaaaccgaaacatacaaactacgattggcattggctactgcacatgctgctgaacttcag
gtaagggtcaatgatgatggaaagtctcctctattttcaagtggacaaattggtaaagac
aacacaatagccagacatggtatccatgggctttaccggctttaccatgtcggtattccg
gggaatctgcttcttgaaggagataacaccatatttctaactcaaccgaaaagcaccagc
cctttccaaggaattatgtatgactatattcgattagaaggccctgcatcttctaatgga
aacaagaaaccttaa

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Ontology (2)   
   KEGG BRITE (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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