KEGG   Gossypium hirsutum (upland cotton): 107924629
Entry
107924629         CDS       T04793                                 
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB1-like
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03022  Basal transcription factors
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    107924629
  09124 Replication and repair
   03420 Nucleotide excision repair
    107924629
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107924629
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107924629
Enzymes [BR:ghi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     107924629
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     107924629
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     107924629
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom
Other DBs
NCBI-GeneID: 107924629
NCBI-ProteinID: XP_016710644
UniProt: A0A1U8LBW8
Position
A11:1994323..1999179
AA seq 775 aa
MGHGERGRPSKKLKLAAKDNNHKSSAVEDENSFYTDEGDDDSRDGEKEGKNRDFSKLELK
PDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVS
VGLETETIIAVLNKLSKTKLPKEMIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKKL
LQDEVIARARIVSEVCYNAPGSDGFTISKTAGEMGTGHDGLLNEAELAAAAEEKETHAFE
IDPAQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFG
NGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTVRDDQI
CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA
HMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA
EVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQERGDKIIVFADNLF
ALTEYAMKLRKPMIYGATSHLERTKILQAFKTSRNVNTIFLSKVGDNSIDIPEANVIIQI
SSHAGSRRQEAQRLGRILRAKGRLEDRMAGGKEEFNAFFYSLVSTDTQEMYYSTKRQQFL
IDQGYSFKVITSLPPPDAGPELSYYHLNEQLALLGKVLTAGDDVVGLEQLEEDADDIALH
KARRTTGSMSSMSGANGMVYMEYSTAKHKLIGQGQNKSKPKDPSKRHHLFKKRYG
NT seq 2328 nt   +upstreamnt  +downstreamnt
atgggacacggagaaagaggtagacctagcaaaaagcttaaacttgccgccaaggataat
aatcataagagctcagctgttgaagatgaaaattcgttttatactgatgaaggggatgat
gattctcgtgatggtgagaaagaaggaaagaatagagattttagcaaattagaactaaaa
ccagaccatgcgaataggccgttatgggcttgtgctgatgggcgtattttcttggagaca
ttctctcctttgtacaagcaagcttatgatttcctcattgctatagccgaacctgtttgc
agaccggagtcgatgcacgagtacaatctaacgccgcattccttgtatgccgccgtatct
gtggggctggaaacggaaactattatcgccgtgttgaataaattgtccaagactaaactt
cctaaagaaatgattgatttcatacatgcctctactgctaattatggcaaagtgaagctt
gtactcaagaagaatcgttactttatcgaatccccatttccggaggtactaaagaaactt
cttcaagatgaggttatagctcgagcgcggattgtttcagaggtttgttacaatgcaccc
ggaagtgacggatttactatcagcaaaactgcgggtgaaatgggaacaggtcatgacggt
ttgcttaacgaagcagaattggcagctgctgctgaggagaaagaaacccatgcctttgaa
atcgaccctgcacaggttgaaaacgtaaagcaacgatgcttgccaaatgctctaaattat
ccaatgttagaggagtatgattttagaaacgacactgtcaatcccgacctagacatggaa
ctgaagcctcatgcacagccgcggccatatcaggaaaagagtcttagtaaaatgtttgga
aatggtagagcaagatctggcattattgtgctaccttgtggtgccggaaaatctctagtc
ggtgtttctgcagcaagccgaataaggaaaagttgcctttgtttagcaacaaatgcagtg
tcagtggatcagtgggcatttcagtttaagctttggtcaaccgtacgggatgatcagatt
tgtcgttttacatctgacagcaaagagagattccgtggcaatgctggagttgttgtgaca
acgtacaatatggttgcttttggtggtaagcgatctgaagaatccgaaaagattatcgaa
gagataagaaacagagaatggggactgttgctaatggacgaggtgcacgtggttcctgct
cacatgtttcggaaagtcatcagtctcactaaatcccactgcaaactcgggcttactgct
acactcgtgagagaggatgaaagaattacggatttgaacttccttattggtcccaagtta
tacgaagcaaattggctcgatttagtaaaaggagggtttatagcaaatgttcagtgtgcc
gaagtatggtgccctatgacaaaggagttttttgctgaatatttgaagaaagaaaattcc
aaaaagaaacaggcactttatgtgatgaatcctaataagttcagggcatgtgagtttctc
attcgattccatgaacaagagcgcggcgataagataattgtttttgcagacaatcttttc
gcattgaccgagtatgcaatgaaattacgcaagcctatgatctatggtgctaccagccat
ctcgagaggacaaaaattcttcaggctttcaaaactagccgtaatgtgaacactattttt
ctctcaaaggtcggtgataactctatagatatcccggaggcaaatgtgatcattcagatt
tcatcgcatgctggttctagacgtcaagaagcccagcgattaggacgtattcttagggcg
aagggtagactcgaagataggatggcaggtggcaaagaggagtttaatgcgtttttctat
tcccttgtttcaacagatactcaggaaatgtactactcaactaaacggcaacagttttta
attgatcaaggttacagctttaaggtgataacaagcttgcctcctcccgatgctggtcct
gagttgagttactaccatctcaacgagcaattggccctactcggaaaagtcttgactgca
ggcgatgacgtggtcggtttagagcaattggaagaagatgcagatgatatagctcttcat
aaagctcgtcgcactacgggatccatgagctcaatgtcgggtgcgaacggaatggtttac
atggaatacagcactgcaaagcataaactcatcgggcagggtcagaacaagagcaagccg
aaagatccatcgaagcgtcatcatttgttcaagaaacgctacggttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (20)   

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