KEGG   Gossypium hirsutum (upland cotton): 107926481
Entry
107926481         CDS       T04793                                 
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
  KO
K11650  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107926481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107926481
   03036 Chromosome and associated proteins [BR:ghi03036]
    107926481
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     107926481
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    107926481
   PBAF complex
    107926481
   GBAF(ncBAF) complex
    107926481
SSDB
Motif
Pfam: SWIB YEATS Med3
Other DBs
NCBI-GeneID: 107926481
NCBI-ProteinID: XP_016712815
UniProt: A0A1U8LHF4
Position
A07:98193785..98196549
AA seq 534 aa
MSMNGNNPPKNLGASSSPFGNAGMVPPPMPGNPAFSQAQLSAGFQAQYQLSQAQALAQAQ
SKAQAQAHAQLQAQLQAQGLSLNQAQNAGFGTLGSSSPSMSTSGSASAKRILQRPPMRPP
GVPMMNTMSPLRTMELTAAARRKKQKLPEKQLQDRVAAILPESALYTQLLEFEARVDAAL
ARKKVDIQEALKNPPCVQKTLRIYVFNTFANQIKTIPQKPNAEPPTWTLKIIGRILEDGV
DPDQPGFVQRTNPLYPKFSSFFKRVTISLDQKLYPDNHIIIWEHARSPTPNEGFEVKRKG
DKEFTVNIRLEMNYVPEKFKLSSALMEVLGIEVDTRPRIIAAIWHYVKARKLQSPNDPTS
FNCDAQLHKVFGEEKVKFTMVPLKISQHLSRPPPIHLEHKVKLSGNSPVGNVCYDVLVDL
PFPIQRELSALLSNAEKSKEIETCDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALI
ESQSLDVKLVAGEASRSSEKERRSDFFNQPWVEDAVVRYLNRKPAAGSDAPGSI
NT seq 1605 nt   +upstreamnt  +downstreamnt
atgtctatgaatggcaataatcccccgaagaaccttggggcatcttcgtcgccctttggt
aatgcggggatggtgcctcctcctatgcctggaaaccctgcattttcacaagctcaactc
agcgctggttttcaagctcagtatcagctatcccaagctcaagcacttgctcaggctcag
tcgaaagctcaagctcaagctcatgcccaactccaagcacagttacaagctcaaggtttg
tcccttaaccaggctcagaatgctggctttgggacattaggttcgtcttcaccctccatg
tctacttctggcagtgcaagtgcaaagagaatccttcaaaggccccccatgcgccctcct
ggtgttcctatgatgaacacaatgtcacctttgagaacaatggaacttacagccgctgca
cgtagaaagaagcagaagcttcctgagaaacaactacaggatagagtggcagcaattctt
cctgaatctgctttgtatacccagcttcttgagtttgaggcacgtgttgatgctgcatta
gctaggaaaaaagttgacatccaggaagcacttaagaacccaccttgtgttcagaaaact
cttcgaatatatgttttcaacacatttgctaatcagattaagacaattccgcagaagcct
aatgcagagcctcctacatggacccttaagattattgggagaatcctggaagatggagta
gatccagatcaacctggatttgttcaaagaacaaaccctttatacccgaagttttcatct
ttcttcaagagagtgacaatttcattggaccaaaaactatatccagataatcatatcatt
atatgggagcatgctcgatcaccgacacctaatgaaggttttgaggtgaagagaaaaggg
gataaggagttcactgtgaacatacggctggaaatgaattatgtacctgagaaatttaag
ctttcttctgctttaatggaagtccttggtattgaagttgatacgcgccccagaattatt
gctgcaatttggcattatgtgaaggctagaaaacttcagagcccaaatgatccgacttcc
tttaattgtgacgcacaacttcataaagtttttggggaagaaaaagtaaaatttaccatg
gttccactgaagatatcacagcatttgtctcgaccaccacccatacatttggagcataag
gtcaagctttcggggaatagtcctgttgggaatgtatgctatgatgtcttagttgatttg
cccttccccatacagagggaattgtctgctcttttgtcaaatgcagagaagagcaaagag
atcgagacctgtgatgaagcaatatgtgctgccataaggaaaattcatgagcaccgtaga
aggcgtgccttctttctaggtttcagtcaatcaccagtggagtttattaatgctttaatt
gagtctcagagcctggatgtgaaactggtagctggggaagctagtcgaagttctgaaaaa
gagcgacgatcagatttttttaaccaaccatgggttgaagatgctgttgtccgttatttg
aatcgcaagccagctgccggaagtgatgcaccaggaagcatatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (2)   
   GenBank (2)   
   EMBL (2)   
Protein domain (3)   
   Pfam (3)   
All databases (21)   

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