KEGG   Gossypium hirsutum (upland cotton): 107927945
Entry
107927945         CDS       T04793                                 
Name
(RefSeq) SWI/SNF complex subunit SWI3D
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    107927945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107927945
   03036 Chromosome and associated proteins [BR:ghi03036]
    107927945
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     107927945
Chromosome and associated proteins [BR:ghi03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    107927945
   PBAF complex
    107927945
   GBAF(ncBAF) complex
    107927945
SSDB
Motif
Pfam: SWIRM-assoc_1 SWIRM Myb_DNA-binding ZZ Myb_DNA-bind_6
Other DBs
NCBI-GeneID: 107927945
NCBI-ProteinID: XP_016714567
UniProt: A0A1U8LN08
Position
A03:111712681..111718666
AA seq 1027 aa
MEEKRRDAGNSPAGPSSAELEPATTRRRAGAQKRKANSLSGSSSSSTPSKRATREKSSNL
ISHSSINHNGPLTRARQGAPSGNLALGLGSGFGGAKLEERILVKESVKAEDLEELNKASE
ELEALEAKIEAEFEAVGSRDSNAHVVPNHCGWFSWKKAHHVEECILPSFFNGKSPVRTPD
VYLEIRNSIMKKFHANPSVKIESKDLQDIEVGDLDARQEVLEFLDYWGLINFHPFPPGDS
AVVSADGDCDGIAKKDSLLENLFHFEVIESRPSVVPKANLSTPSMPSGFLPESAVLDDLL
RLEGPSVDYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNRKFGSGMSSSDFILMEPGEA
SGLSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFLQMPIEDVFFNSDD
NIDTNSKETSAPAVVTDETSVPKDVSEATETKTTSQEDQVPQEDQTQTTPVDASKPEDEK
EKRESEEMSKPETGTDIKCAPETSKPEETDEAKDGEDTKENCAIMALREAFEAVGYNLTS
ESTLSFADVGNPVMALAGFFARLAGPKIGAASAQTSLKALSGSSPNIQLAARNCFLLEDP
PDDKKEQTGSESVVNDAGNQDAQNVENSENKSLKEDKSTPVLNQKSSSSNHADQNAETSL
PEEKVTSASPNCLSTDKKEPGTCATSKEAKKASQSKDHEPGVMRGSDNLASQVPPSSAEE
TWGKETSAQESSQRTEVVKEVEMSESVPLEKNEPADAAASEPVAELSEPAEASENVETVS
GSPSRAKNEQQPVKSSSGGELSQPTKASNDIEMVSDSQPSERSELQQPVTSNSVNENGTS
TDVITEGKSESHTSTETKDDSSIDKVKRAAVTALSAAAVKAKLLAGQEEDQIRQLTTSLI
EKQFSKMEAKLGFFNEMEGLMMRVKQQLDRSRQKLYHERTQIIAARLGLPASSSRAMPPA
NTANRIATNYANSVARPPMRTTAARPPMQRPMGPMAPTSSNPFVSTTVAGSSIRPASQDN
LSSVRTK
NT seq 3084 nt   +upstreamnt  +downstreamnt
atggaggagaaacgccgggacgcggggaactcaccggctggaccgagctcagccgagctg
gagccggcaacaactcgccgtcgagctggagcacaaaagaggaaagctaattctctttcc
gggtccagctcatcatcgacgccgtcgaaacgggctacacgggagaagtcatctaacttg
atctcccactcttcgatcaaccataacggtcctttaactagggctcgccaaggagcgcct
agtggaaacctagccttgggtttgggctcgggattcggtggcgcgaagcttgaggagagg
attttggttaaagagagtgtgaaggctgaagatttggaggaattgaataaggcaagtgaa
gagttggaggctttggaagctaagattgaagctgagtttgaagctgttgggtctcgtgac
agtaatgcgcacgtggttcctaatcattgcggatggttttcatggaaaaaagctcaccat
gtggaggaatgtatattaccttcattctttaatgggaaatccccagtgcgtacccctgat
gtgtacttggagatacgtaatagcattatgaagaaatttcatgcaaatccgagtgtaaaa
attgagtctaaagatctgcaagatattgaagttggcgacttggatgcaaggcaggaagta
ctggagttcttggactactggggtttgattaactttcatccattccctccaggtgattct
gccgtggtcagcgctgatggtgattgtgacgggatagcaaaaaaggattctttgcttgaa
aatttgtttcactttgaggtgattgaatcgcgcccatcagttgttcccaaagctaacctt
tcaactccatccatgccatctgggtttcttcctgaatctgcagttcttgatgatttgttg
agacttgagggaccatctgttgattaccattgcaactcttgttcagctgattgctctcgg
aagcgctaccattgccagaagcaggcagattttgacttatgtactgattgctttaacaac
cggaagtttggctctggcatgtcttcttctgattttattctcatggagcctggtgaggcc
tctggccttagcggcgggaagtggacagatcaggaaactctccttcttctcgaggcacta
gaactttataaagaaaactggaatgagattgcagagcatgttgcgacaaaaaccaaagct
caatgcatactgcactttcttcaaatgccaattgaggatgtattctttaattctgatgat
aatatagacactaattccaaagaaacatctgcacctgctgtagtgactgatgaaacatct
gtccctaaagatgtctctgaagcaacagagactaagactacttctcaggaagatcaggtt
cctcaagaagatcagacccagactacacccgtggatgcttcaaaacctgaagatgagaaa
gaaaagagagagagtgaggaaatgtcaaaacctgaaacaggaaccgacataaaatgtgct
ccagaaacatcaaagccagaagaaacagatgaagcaaaagatggagaagacactaaagaa
aattgtgcaattatggctctaagggaggcattcgaagctgttggttataatttaacatct
gagagtacactctcatttgctgatgtgggaaaccccgtcatggcattggcaggattcttt
gcacgccttgctgggcccaaaattggtgctgcttcagcacagacttcactgaaagcattg
tctggtagttctcccaacattcaactggctgcaaggaactgctttcttttggaagatcca
ccagatgacaagaaggaacaaactggttctgagagtgttgtcaatgatgccggtaatcag
gatgctcagaatgtcgaaaattcagaaaacaaaagcctcaaggaggacaagtccacccct
gttttgaatcagaaaagttcatcgagcaaccatgcagaccaaaatgctgaaacttctctt
cctgaagaaaaggtgacatcagcttcacctaattgcctatccactgataagaaagagcca
ggtacttgtgcaaccagtaaggaagctaaaaaggctagtcagtcaaaagatcatgaacca
ggtgtaatgaggggatcagataacttggcatcccaggttccaccaagttctgcggaggag
acttgggggaaggaaacctcagcacaagagtcttctcaacgaacagaggtagtgaaggaa
gtagaaatgtccgagtctgttccattagaaaagaatgagcctgctgatgcagctgcatca
gagccagtggcagagctatctgaaccagcagaggcatcagaaaatgtagagacggtttct
ggctctccatctagagcaaagaatgagcaacaaccggttaaatcaagttctggtggagag
ctttctcagcctacaaaggcatcaaatgatatagaaatggtgtctgattcacagccatca
gaaaggagcgaacttcagcaaccagtcacatctaattcagtaaatgaaaatggaacaagc
acagatgtgattacagaaggtaaaagtgagagccatacctctacagaaacaaaagatgat
agtagcattgataaagtaaagcgtgctgccgtaacagcactctcagcagctgcagtgaag
gccaaacttcttgcaggccaggaagaggatcaaatccggcaacttacaacatcattaata
gaaaagcagttttctaagatggaagccaaattaggtttcttcaatgaaatggagggtctc
atgatgagggtaaaacagcaattagacagatcaaggcagaagctttaccatgaacgaact
caaattattgcagctcgactggggttaccagcttcctcctctagagcaatgccaccagca
aataccgcaaatagaattgcaaccaactatgcaaattcagtcgcaaggcctccgatgaga
acaactgccgcaagaccaccaatgcaaagacctatggggcctatggctcctacctcatcc
aatccatttgtatctacaacagttgcaggaagttcaatccggcctgctagccaagacaac
ctttcttcagtcagaacaaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system