KEGG   Gossypium hirsutum (upland cotton): 107935045
Entry
107935045         CDS       T04793                                 
Name
(RefSeq) putative tRNA pseudouridine synthase
  KO
K06173  tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ghi03016]
    107935045
Enzymes [BR:ghi01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.12  tRNA pseudouridine38-40 synthase
     107935045
Transfer RNA biogenesis [BR:ghi03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    107935045
 Prokaryotic type
    107935045
SSDB
Motif
Pfam: PseudoU_synth_1
Other DBs
NCBI-GeneID: 107935045
NCBI-ProteinID: XP_016723072
UniProt: A0A1U8M8C4
Position
A03:4787053..4790411
AA seq 509 aa
MAISCLRLSLAPWLVKTPRPRPPLKVKPFRIICTAQSSVVDEKELPLPLSACKWEPFRKK
KVVMRVGYVGTDYRGLQLQRDEHELSTIENELETAIFKAGGIRDSNYGDLHKIAWARSSR
TDKGVHSLATMISLKMEIPEDAWKEDPSGIALANCVNSYLPDNIRVFSILPSQKSFDPRR
ECNLRKYSYLLPAEIIGIKSHFTEAETNCHISDFNSILNCFEGEHPFHNYTQRAKYRSRV
PPRQTARNGRPPRAKSHNGSSTSEIEESDVEEDTRIDETSTVNNEEMSCGFGEPVVDSCN
GQGNGSKDQSPKVVIARWLHEPDETDRITSSHFRKIFRCSCGKLQNSMGFDYVEISIWGE
SFMLHQIRKMVGTAVAVKRKLLPRDILTLSLAKFSRVVLPLAPSEVLILRGNTFILRKAP
GNVTRPEMLVMVESEEILKAVDEFYKSVMLPQVSKFLDPSKSPWEEWVENLDFNTGIPDA
ELDEVRNAWKLWKEKLPIRRTSSAPAVSL
NT seq 1530 nt   +upstreamnt  +downstreamnt
atggccatttcttgtctgagactatccttggctccatggctggtgaaaactccaaggcca
agacctcctttgaaagtaaaaccttttcgaatcatttgcactgctcagtcctctgtagta
gacgaaaaggagctgcctctccctctctccgcctgcaaatgggaaccttttcgcaagaaa
aaggttgtcatgcgggtcggctacgttggcaccgactacagaggtcttcaactgcagcga
gatgaacacgagctatctactattgaaaatgaactggaaactgccattttcaaggctggg
ggaatccgtgacagtaattatggtgatctgcacaaaattgcctgggccagaagcagccga
acagataaaggagttcactctttggcaacaatgatctccttaaaaatggagatacctgaa
gatgcttggaaagaagaccccagtggcattgccctggctaattgtgttaactcttatctt
cccgacaatatccgagtcttcagtatattaccttcacaaaagagtttcgatcctagaagg
gaatgtaatctccggaaatattcctaccttctaccagctgaaatcattggaataaaaagt
cacttcactgaagctgaaactaattgtcatatatcagacttcaacagtatattaaactgt
tttgagggtgaacaccctttccataattacactcaaagagccaagtacagaagtcgagtt
cctcctaggcaaactgccagaaatggtcgtccaccaagagctaaatctcataatggctca
tcaacttccgagatagaggaaagtgatgtagaggaagatacaaggattgatgaaactagt
acagtaaataatgaggaaatgtcttgtggttttggtgaaccagtggttgactcttgtaac
ggtcagggcaatggctcgaaggatcaaagtcctaaggtagttatagcaagatggttacat
gaacctgacgagacagatagaataacatcttcccactttcgaaaaatttttcgctgttct
tgcggaaagctgcagaattcaatgggatttgattatgttgaaatttccatatggggagag
tctttcatgttacatcagatccgcaaaatggttggaactgccgtagctgtgaagcgcaaa
ttgctcccaagagatattctaacattatcgctagccaaattctcacgggttgtccttccc
cttgctccatctgaagttctaattttgaggggaaacacattcatattgagaaaggcgcct
ggtaatgtaacaagacctgaaatgctggtgatggttgaatcagaagaaatcctcaaggca
gttgatgagttctacaaatctgtaatgttgccgcaagtttcaaaatttttggacccttcc
aaatcaccctgggaagaatgggttgaaaatttagattttaacacaggcattcccgatgca
gagttggatgaagtcaggaatgcttggaagctgtggaaggagaagttgccgattaggcga
acttcttctgcacctgcagtgagcctataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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