KEGG   Gossypium hirsutum (upland cotton): 107936571
Entry
107936571         CDS       T04793                                 
Name
(RefSeq) receptor homology region, transmembrane domain- and RING domain-containing protein 1
  KO
K15692  E3 ubiquitin-protein ligase RNF13 [EC:2.3.2.27]
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ghi04121]
    107936571
Enzymes [BR:ghi01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     107936571
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    107936571
SSDB
Motif
Pfam: zf-RING_2 PA zf-C3HC4 zf-RING_11 zf-C3HC4_2 zf-RING_UBOX zf-rbx1 zf-RING_5 zf-ANAPC11 zf-C3HC4_3 zf-RING_16 HTH_63 PHD zf-RING_4 RINGv
Other DBs
NCBI-GeneID: 107936571
NCBI-ProteinID: XP_016724816
UniProt: A0A1U8MDB9
Position
A02:107634603..107637787
AA seq 286 aa
MREALFGIFSLLFIAYFSELASSTIVFKPLSISLPDLPAKFAIGNNTGVCGALEVADPLD
ACSPLRNGFGSNQSDSIRLALIIRGDCSFEEKIRNAQNKGFSAAIVYDDKYSNNLVYMMV
NPKGIKVLAVFVSKSAGEFLKDQAKGENGECCIYPPLNGKAWTVFSICFLSLVVIAAFLV
IAFVAPRSLSNWQRRSLVRSVDSKMVEALPRFMFGSARSGIAGETCAICLEDYNDGELLK
VLPCQHDFHSSCVESWLTKWGTFCPVCKLDMTTKFAFSEIKRGSRV
NT seq 861 nt   +upstreamnt  +downstreamnt
atgagagaagctttgtttgggattttttcattgttatttattgcttatttcagtgaatta
gcttcatctaccattgtttttaagcccttatcaatttccttgccggaccttcccgccaaa
ttcgctattgggaataacacgggcgtttgcggtgctcttgaagtggcggatccattggat
gcttgtagtccgctccgaaacggattcggatctaatcaaagtgattctataagacttgct
ttgataattagaggggattgttctttcgaggagaaaatccgaaacgctcaaaataagggt
ttttctgctgcaattgtttacgatgataaatatagtaacaatttagtatacatgatggtg
aaccctaaaggaatcaaagtgctagctgtttttgtttctaaatctgctggtgaattttta
aaagatcaggctaaaggtgaaaatggggaatgctgtatttacccaccattgaatgggaaa
gcatggactgttttttctatttgtttcctatcacttgttgttatagcagctttcttggtg
attgcctttgttgctcctagaagcttgtcgaattggcaacgaaggagtttagtgagaagt
gtggatagtaaaatggttgaagctcttccccgttttatgtttggctcggctcgttcgggt
attgccggtgaaacttgtgcgatttgcctcgaggattataatgacggggagcttcttaaa
gtgcttccttgtcaacatgattttcattcaagctgtgtggagtcatggctgactaagtgg
gggacgttttgccctgtatgcaaactcgatatgacaaccaaatttgcattttccgagatc
aagcggggcagccgagtgtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (15)   
   Pfam (15)   
All databases (29)   

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