KEGG   Gossypium hirsutum (upland cotton): 107939466
Entry
107939466         CDS       T04793                                 
Name
(RefSeq) nuclear cap-binding protein subunit 1
  KO
K12882  nuclear cap-binding protein subunit 1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
ghi03015  mRNA surveillance pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107939466
  09122 Translation
   03013 Nucleocytoplasmic transport
    107939466
   03015 mRNA surveillance pathway
    107939466
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107939466
   03041 Spliceosome [BR:ghi03041]
    107939466
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     107939466
Spliceosome [BR:ghi03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    107939466
SSDB
Motif
Pfam: MIF4G_like MIF4G MIF4G_like_2 TPR_MLP1_2 DUF5798 Lectin_N
Other DBs
NCBI-GeneID: 107939466
NCBI-ProteinID: XP_016728290
UniProt: A0A1U8MNA5
Position
A13:complement(110110653..110120457)
AA seq 864 aa
MSSWRNLLLRIGDKSSEYSSSSDFKDHIETCFGALRRELGHSSAEILSFLLQCAEQLPHK
IPLYGTLIGLLNLEDEDFVKQIVENTQNSFQDALDSGNCDGIRILMRFLTALMCSKVLQP
TSLVVVFETLLSSAAITVDEEKGNPSWQARADFYVICILSCLPWGGAELAEQVPEEIERV
LVGIQAYLSIRRHTSDSGLSFFEEDESGGDVEKDFLEDLWERIQVLSSNGWKVESVPRPH
LSFEAQLVAGKSHEFGPISCPEQPELPSTISAVAYGKQKHDAELKYPQRMRRLNIFPASK
TEDLQPIDRFVVEESLLDVLLFFNGCRKECAAFMVGLPVPFRYEYLMAETIFSQLLLLPQ
PPFKPIYYTLVIMDLCKALPGAFPAVVAGAVRALFDKIADLDMECRTRLILWFSHHLSNF
QFIWPWEEWAYVLDLPKWAPQRVFVQEVLEREVRLSYWDKIKQSIENAPALEELLPPKGG
PNFKYSGADDQEKTEQEQALSAELSNKVKGRQSAREIILWIEENVYPIHGQEITLSVVIQ
TLLDIGSKSFTHLITVLERYGQVMAKLCSDQDKQVMLISEVGSYWKNNAQMTAIAIDRMM
GYRLISNLAIVRWVFSPENIEQFHISDRPWEVLRNAVSKTYNRITDLRKEISSLKKSVVS
AEEAASKAKADLEAAESKLTLVEGEPVLGENPTKLKHLKSVAEKTKEETVSMHDSLEAKE
ALLARALDENEVLFLSLYKNFSNVLMERLPDASRDGTLQSLKSVNGDSMAVDIEEPSTME
VDDENERPKKSQSNGGKTTNGYNVREKEQWCLSTLGYVKAFSRQYASEIWPHIEKLDAEV
FTEDAHPLFRKAVYSGLRRLSNEL
NT seq 2595 nt   +upstreamnt  +downstreamnt
atgagcagctggagaaatcttcttctgcgaattggcgataaaagctcagagtacagttcc
tcttccgattttaaagaccacattgaaacttgctttggagctttacggagagagttgggg
cattcttctgctgaaattttatctttccttctccaatgtgcggaacaattgcctcacaag
attccattgtatggaacattgattggtttgttaaatttggaagatgaagacttcgttaaa
caaatagttgagaatacacaaaatagttttcaggatgctctggattctggaaattgtgac
gggattcgtattttaatgcggtttctgactgctttgatgtgcagcaaagttctccaaccc
acttcacttgtagttgtttttgaaactctattatcgtcagctgccataacagttgatgaa
gagaaaggaaatccttcgtggcaagcacgtgctgacttttatgtgatttgcattttatct
tgtcttccatggggaggagcagaactcgcagagcaagtacctgaggagatagaaagagtg
ttggttggtatacaagcctatttgagcattcgaaggcatacttctgactctggattatct
ttttttgaggaagacgagtctggaggtgacgttgaaaaggatttccttgaagatttatgg
gaacggatacaagttctatctagcaatgggtggaaagttgaaagtgttccaaggcctcac
ttatcatttgaagcgcagctggttgctggaaagtctcatgagtttggacccattagctgt
cctgagcaacctgagcttccttcaacaatttctgccgtagcttatggaaagcaaaagcat
gacgcagagttgaagtatcctcaaaggatgcgcaggcttaatatttttcctgctagcaaa
acagaggatctgcagccaattgatcgctttgttgttgaagagtctttgctggatgtgctt
ttgttcttcaatggatgtcgaaaggaatgtgctgctttcatggtaggcttgcctgtgccc
ttccgatatgagtatctaatggcagagacaatattctcccagctgcttttgttaccacaa
cccccattcaagccaatatattacacactggttattatggatctctgtaaggctctccct
ggggcctttcctgcagttgtagctggtgcagttcgtgctctttttgataaaattgctgat
ttagacatggaatgtcggacacgccttatcctttggttttcacaccatctatcaaatttc
caatttatttggccttgggaagaatgggcttatgtcctagacctcccaaagtgggctcca
cagcgtgtatttgttcaagaggtcttggaaagagaagttcgtttgtcatattgggacaaa
ataaagcagagcattgagaatgcacctgctctagaagagttgttaccacccaagggtggt
ccaaatttcaagtatagtggagcggatgatcaagaaaagactgaacaagagcaggcactc
tctgcagagcttagcaacaaggtgaaaggaaggcagtcagcacgtgagataattttatgg
attgaggaaaatgtatatcctattcacggccaggaaattaccctcagtgtggttatacaa
actcttcttgacattggatctaaaagtttcactcatttgatcactgtcttggagaggtat
ggacaggtcatggcaaaactttgctctgatcaagataagcaggtcatgctcatatctgaa
gttggttcatattggaagaacaatgcacagatgacagcgatagcaattgataggatgatg
ggttatcgtcttatatctaatttggccattgtgagatgggtcttctctcctgaaaacatt
gagcaatttcatatatctgatcgtccatgggaggttctgaggaatgcagttagtaagaca
tacaatcgtatcactgatctaaggaaagagatttcatctctgaagaagagtgttgtatct
gcagaagaagctgcatctaaggcaaaagcagatttggaggctgctgagtcaaagcttacc
ctagtggaaggtgaacctgttcttggtgaaaaccctacaaagttaaagcatttaaaatct
gtggctgaaaagaccaaggaagagacagtatccatgcatgactctttagaggccaaggag
gctcttcttgctcgagcactagatgaaaatgaggttttgttcctctctctatacaaaaac
ttctccaacgtgttgatggagcgtttgcctgatgcatctagagatggaacattgcaatca
ttaaaatctgtcaatggagattcaatggctgttgacatcgaagaaccatcaaccatggag
gtggatgatgagaatgaaagaccaaagaaaagtcaatcaaatggcggtaagacgactaat
ggttacaatgtaagggaaaaagaacagtggtgtttatcaactctcggctatgtcaaggct
ttctcaaggcaatatgcatctgagatatggcctcacatcgagaaactggatgcagaggta
ttcactgaagatgcccatcctcttttccggaaagctgtttattctggccttcgccggctg
agcaatgagttgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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