KEGG   Grimontia hollisae: AL542_11245
Entry
AL542_11245       CDS       T04260                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
gho  Grimontia hollisae
Pathway
gho03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gho00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AL542_11245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gho03019]
    AL542_11245
   03016 Transfer RNA biogenesis [BR:gho03016]
    AL542_11245
Enzymes [BR:gho01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     AL542_11245
Messenger RNA biogenesis [BR:gho03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AL542_11245
Transfer RNA biogenesis [BR:gho03016]
 Prokaryotic type
  tRNA degradation factors
   AL542_11245
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 OB_Dis3 RNase_II_C_S1
Other DBs
NCBI-ProteinID: AMG30875
UniProt: A0A377HII0
Position
1:1586681..1589170
AA seq 829 aa
MSQDKHLHSNDPFLGREAEKYDNPVPSREHLLTVIKGFTTPVSRDQLFEVLGLRSDEEYE
GLRRRLRAMERDGQLIFTRRQCYALPERLDLVKGTVIGHRDGFGFLRPEGKGNREDWLLP
HHQMKQVMHGDFILAQPAGTDKRGRKEARVVRVLEERKGQIVGRYFVENGMGFVVPDDSR
LGQDIVIPQDERKGARMGNVVVVEILQRPTRQYNPVGRVVEVLGENMAPGMEIEIALRTH
NIPHVWPQDVEKQVKSFTEQVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVFCEKKKSG
GWRLYVAIADVSYYVRPDSPLDKEAVNRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDRL
CMVCEMTISESGKLSGYKHYEAVMNSHARLTYTKVAAMLEGDEALRERYAPLVPHLEELN
RMYKALKAAREQRGAIEFETVETKFIFNAMRKIERIVPVERNDAHKIIEECMILANIASA
RFVEKAKEPALYRVHEAPGEERLTGFKDFLGELGLTLEGGLEPSPTDYAKLAHAIAGRPD
QELIQTMLLRSMKQAVYQADNAGHFGLALKQYAHFTSPIRRYPDLLLHRAIKYLIAKQEG
RNTDRWTPTGGYHYSFDDMDVMGEQCSMTERRADDATRDVSDWLKCEYMQDHVGDVMEGT
IANVTGFGFFVRLNDLHIDGLVHISNLDNDYYNYDMVQQKLVGESSGRVFRLGDQVTVKV
LSVNLDERMIDFELEGTTRKARGAGKTARNKAKKGRAESGKSPEARQERMSVRQQLKRGA
IPKAEGDKASAGKRGGKGDNPARKKTKAEKVRKKKAQKSKPARTGKKNK
NT seq 2490 nt   +upstreamnt  +downstreamnt
atgtctcaagacaaacatctacacagcaacgacccttttctggggcgtgaagcagaaaaa
tatgacaatcctgtgccgagccgtgaacatcttctcactgtgatcaaagggtttaccaca
ccggttagccgtgaccagctctttgaagtgctgggcctgcgcagcgatgaagaatacgaa
ggtttgcgccgccgcctgcgtgcgatggagcgcgatggccagctgattttcacccgtcgt
cagtgctatgccctgccagaacgtctggatttggtgaaaggcaccgtgattggccaccgt
gacggctttggcttcctacgtccggaaggtaaagggaaccgggaagactggctgctgcca
caccaccagatgaaacaggtcatgcacggtgacttcattctggcccaacctgccggtacc
gataaacgtggccgcaaagaagcccgcgttgtgcgcgtactggaagagcgcaaagggcag
attgttggccgttattttgtggaaaatggcatgggttttgtcgtgccggatgactcccgc
cttggccaggatattgttatcccgcaggacgagcgcaaaggcgcgcgtatgggcaatgtg
gtggtggttgagatcctccagcgcccgacccgtcaatacaatccggttggccgcgtggtg
gaggtgctgggtgagaacatggcaccgggcatggaaatcgaaattgccctgcgcacccac
aatatcccacacgtgtggccgcaggacgtagaaaagcaagtcaaaagctttaccgaacag
gtgccggaagaagccaaaaaaggccgggtcgatttgcgtgacctgccattggtcaccatt
gacggcgaagatgcccgcgactttgatgatgccgtcttctgtgagaagaaaaagtccggg
gggtggcgcctgtatgtcgcgattgcggacgtcagttactacgtccgtccggattcaccg
ctcgataaagaagcggtaaaccgtggtaactcggtctacttcccctcgcaggtgatccct
atgttgccggaagtgctgtctaacggtttgtgttcactgaacccgcaggtcgatcgcctg
tgcatggtgtgtgagatgactatctctgagtctggtaagctgtctggctacaagcattat
gaagcggtgatgaactcccacgcacgcctcacatacaccaaagtagcggcgatgctggaa
ggtgatgaggcgcttcgcgaacgatatgcaccgctggtgccacaccttgaagagctaaac
cgcatgtataaagcgctcaaagcagcgcgtgagcagcgtggtgcgattgagttcgaaaca
gtggaaaccaagttcatcttcaatgccatgcgcaagattgaacgcattgtgccggttgag
cgcaatgatgctcacaagatcatcgaagaatgtatgattctggcgaacatcgcctctgcc
cgttttgtcgaaaaagccaaagagcctgcgctttaccgggtacacgaagcgccgggtgaa
gagcgcctgaccggttttaaagattttctcggtgagcttgggctgacgctggaaggcggc
cttgagccatccccgaccgattacgccaagctggcgcatgcgattgctggacgtccggat
caggagctgatccagaccatgctgctgcgctccatgaagcaggccgtgtatcaggcagat
aatgccggccactttggtctggcgctgaaacagtatgcccattttacctcgccaatccgc
cgttatccggatttgctgctgcaccgtgccatcaaatacctgattgccaaacaggaaggg
cgcaatactgatcgctggacaccgaccggcggctatcactactccttcgatgatatggac
gtgatgggtgagcaatgttcgatgacggagcgccgtgctgacgatgcaacccgcgatgtg
tcagactggctcaaatgtgaatacatgcaggatcacgtcggtgatgttatggaaggcacc
attgccaacgtgaccgggtttgggttctttgtccgcctcaatgatttgcacatcgatggg
ttggtacatatctcaaaccttgacaacgattattacaactacgacatggtgcagcaaaag
ctggtgggtgaaagctctggccgtgtattccggcttggcgatcaggtgacggtcaaagta
ttatccgtcaaccttgatgaaaggatgatcgatttcgagctggaaggtacaacccgtaaa
gcccgtggtgccggtaaaaccgctcgcaataaagccaagaaaggccgtgcggagtcaggt
aagagcccagaggcaagacaagagcgtatgtctgtccgccagcaactgaaacgtggcgcc
attccaaaagcggagggcgacaaagcgtcagcgggtaagcgtggcggcaaaggcgacaat
ccggcgagaaagaaaaccaaggcggaaaaggtgcgcaagaaaaaagcgcagaaaagtaaa
ccggcaagaacaggcaagaaaaataagtaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (17)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (35)   

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