KEGG   Gekko japonicus (Schlegel's Japanese gecko): 107118491
Entry
107118491         CDS       T04299                                 
Symbol
LSM7
Name
(RefSeq) LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
gja  Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03018  RNA degradation
gja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:gja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107118491 (LSM7)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107118491 (LSM7)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gja03019]
    107118491 (LSM7)
   03041 Spliceosome [BR:gja03041]
    107118491 (LSM7)
Messenger RNA biogenesis [BR:gja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107118491 (LSM7)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107118491 (LSM7)
Spliceosome [BR:gja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107118491 (LSM7)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 107118491
NCBI-ProteinID: XP_015276332
Position
Un
AA seq 109 aa
MPVESKMADKEKKKKESILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEY
MRDPDDQYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFIQQQDG
NT seq 330 nt   +upstreamnt  +downstreamnt
atgcctgtggaaagcaagatggcggacaaagaaaagaagaagaaggagagcattttggac
ctctccaagtacattgacaaaaccatccgtgtcaaattccaaggtggtcgggaagctagt
ggtgtcctgaagggatttgaccctcttctcaaccttgtgttggatggtaccatcgagtac
atgagagatccagatgaccaatacaagctcacagaggacactcgtcagctgggattggta
gtctgccgaggaacatctgtggtccttatctgtcctcaggatgggatggaagccattcca
aatccatttatccaacagcaggatggctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (20)   

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