KEGG   Gekko japonicus (Schlegel's Japanese gecko): 107124745
Entry
107124745         CDS       T04299                                 
Symbol
PABPC1
Name
(RefSeq) poly(A) binding protein cytoplasmic 1
  KO
K13126  polyadenylate-binding protein
Organism
gja  Gekko japonicus (Schlegel's Japanese gecko)
Pathway
gja03015  mRNA surveillance pathway
gja03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gja00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107124745 (PABPC1)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107124745 (PABPC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gja03019]
    107124745 (PABPC1)
   03041 Spliceosome [BR:gja03041]
    107124745 (PABPC1)
Messenger RNA biogenesis [BR:gja03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     107124745 (PABPC1)
   mRNA cycle factors
    Stress granule specific factors
     107124745 (PABPC1)
Spliceosome [BR:gja03041]
 Complex C
  Other components
   Complex C specific factors
    107124745 (PABPC1)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_7 RRM_occluded RRM_3 YflT
Other DBs
NCBI-GeneID: 107124745
NCBI-ProteinID: XP_015283737
Position
Un
AA seq 606 aa
MRVKHTSKYLLSQSVWLPFLTDVCFPLVEAERALDTMNFDVIKGKPVRIMWSQRDPSLRK
SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI
EKMNGMLLNDRKVXVHKLFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEL
FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV
ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG
RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVR
AVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQLAQLRPSPRWTTQGARPHPFQNM
TGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ
YKYAAGVRNPQQHLNTQPQVAMQQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLI
QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP
AGVPSV
NT seq 1821 nt   +upstreamnt  +downstreamnt
atgcgtgtaaaacacaccagcaagtatctcctttctcagtctgtgtggcttcctttcctg
acagatgtctgctttccattggttgaagctgaacgagctttagatacaatgaattttgat
gtcattaaaggaaagccagtgcgtatcatgtggtcccagcgtgatccatctctgcgtaaa
agtggtgttggaaacatctttattaaaaacctggacaaatcaattgataataaagctttg
tatgacacattttctgcttttggaaatatcctgtcttgtaaggttgtatgtgatgaaaat
ggatccaaaggctatggatttgtacactttgagacacaagaagctgcagaaagagctatt
gaaaaaatgaacggaatgttgcttaatgatcgcaaagtgtgagtacacaaattatttgtt
ggacggttcaaatctcgtaaagaacgtgaagcagaacttggagctcgggctaaggagttc
acaaatgtttacatcaagaattttggagaagacatggatgatgagagacttaaggaactc
tttggcaagtttgggcctgccttaagtgtgaaagttatgactgatgagagtgggaaatcc
aaaggctttggttttgttagttttgaaagacatgaggatgctcaaaaagctgtagatgaa
atgaatggaaaggaactgaatggaaaacagatatatgttggtcgtgctcagaaaaaggta
gaaagacaaacagagctcaagcgtaaattcgagcaaatgaagcaggacaggatcaccaga
taccagggagttaatctttatgtgaaaaatctagatgatggaatcgatgatgagcgccta
cgcaaagaattttctccatttggcacaatcactagtgcaaaggtcatgatggaagggggc
cgaagtaaaggatttgggtttgtctgcttttcctcaccagaagaagcaaccaaagcggtt
acagaaatgaatggtagaattgtggccactaaaccactgtatgtagccttagcccaacgt
aaggaagaacgccaagctcatctcaccaaccagtacatgcagagaatggcaagtgtgagg
gcagtgcccaatccggtcatcaatccttaccagccagcgcctccttcaggttatttcatg
gcagctattccacagactcagaaccgtgctgcgtactatcctactagccaacttgctcaa
ctcagaccaagccctcgctggactactcagggtgccagacctcatcctttccagaacatg
acaggtgccatccgccctgcagctcccagaccaccattcagtaccatgaggccagcttca
tcacaggttccaagagtgatgtcaacacagcgtgttgctaacacatcaacccaaactatg
ggtccacgtccagccgcagcagcagctgcagctactccagctgtgcgcaccgttccacag
tacaagtatgctgcaggtgttcgcaatcctcagcaacaccttaatactcagccccaggtt
gctatgcagcagcctgctgtccacgtgcaaggtcaggaacctttgactgcttcaatgttg
gctgctgcccctccacaagaacagaagcaaatgctgggagaacggctgttccctcttatt
caagccatgcaccccactctggcgggtaaaatcactggtatgctgttagagattgacaac
tctgagctccttcacatgcttgagtctcctgaatctcttcgttcaaaggttgatgaagct
gtagccgtactgcaagcccaccaagctaaagaagctgctcagaaagctgttaacaatcca
gcaggtgttccaagtgtctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (43)   

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