KEGG   Geobacillus kaustophilus: GK1170
Entry
GK1170            CDS       T00217                                 
Symbol
priA
Name
(GenBank) primosomal replication factor Y (primosomal protein N')
  KO
K04066  primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
Organism
gka  Geobacillus kaustophilus
Pathway
gka03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gka00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GK1170 (priA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gka03400]
    GK1170 (priA)
Enzymes [BR:gka01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GK1170 (priA)
DNA repair and recombination proteins [BR:gka03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GK1170 (priA)
SSDB
Motif
Pfam: PriA_3primeBD PriA_C DEAD ResIII PriA_CRR Helicase_C zinc-ribbons_6 AAA_16 PIF1 AAA_30 ATPase_2 TrwB_AAD_bind AAA_19 ADDB_N LexA_DNA_bind Kinesin DAP3 SWI2_SNF2 T2SSE zf-ISL3
Other DBs
NCBI-ProteinID: BAD75455
UniProt: Q5L0S5
Position
1189753..1192158
AA seq 801 aa
MKVASVIVDVPSRQTDRPFDYLIPERWQGIIQPGMRVTVPFGARRLQGFVVDVKDHSDIK
QLKPIEHVLDVVPVLNEELLDLGRYLTETTLCFAISAYQAMLPAAMRAKYEKTLRLTDEE
KRERLPDEVKPLFAGRTEAAWKEVEAAGLWRAAQKAVQQGVLEAVYKVKEKAGKKTVKHA
ALAIPSEQAKQELGSLPARQKEVLSFLLEKGKAASVAELQAVLGVSSAPLKALVDKGFVV
LNDVEVYRDPYEHRTFQPSEPPALTQAQEAALAKIAASVRAGEHRTFLLYGVTGSGKTEV
YMQAIDEALRQGKEAIVLVPEISLTPQMVERFKSRFGSKVAVLHSGLSVGEKYDEWRKIH
RKEVQLVVGARSAVFAPFENLGMIIIDEEHETSYKQEEMPRYHARDVAIYRARRHSCPVV
LGSATPSLETFARAAKGVYELLELPERISDRGLPDVHVVDMREELRSGNRSMFSRRLLDE
LRRRLERGEQAVLLLNRRGYSTFVMCRSCGYVIRCPHCDISLTYHRAGERMKCHYCGHEE
PLVPRCPSCGSEHIRFFGTGTQKVEEELTRLLPKARVIRMDVDTTGRKGAHEELLSRFAA
KEADILLGTQMIAKGLDFPNVTLVGVLAADTMLHLPDFRAAEKTFQLLTQVSGRAGRHEL
PGEVIIQTYTPDHYSIELAARHDYRAFYQREMALRKAHGYPPYYYLTLITAAHEEAPAAA
KAAEKIAAYLRKHLSHEAVVLGPVASPIARLHDRYRYQCMIKYKREPNLTAALKAVIDRY
QADAAHGGVTITVDTNPYMMM
NT seq 2406 nt   +upstreamnt  +downstreamnt
atgaaagtagcatccgtgattgtcgatgtcccgtcccggcagacggaccgcccgtttgat
tatttgattccggaacgctggcaaggcatcatccagccgggcatgcgggtgacggtgccg
tttggggcgcggcgtttgcaagggtttgtcgttgatgtgaaagaccattccgacatcaaa
caactgaaaccgattgagcatgtgcttgatgtcgtgccggtgttaaacgaagagctgctt
gatcttggccgctatttaacggaaacgacgctttgttttgccatttcggcgtaccaggcg
atgctgccggcagcgatgcgggcgaaatatgaaaaaacgctccgtttgacagatgaagag
aagagagagaggttgccggatgaggtaaagccgctgtttgccgggcggacggaagccgct
tggaaagaggttgaggcggccggtttatggcgggcggcgcaaaaagcggtgcagcagggc
gtgctcgaggcggtctacaaggtgaaagaaaaagcgggcaagaaaacggtgaagcacgcc
gctcttgccattccatcggaacaggcgaaacaggagctcgggtcgctgccggcaagacaa
aaagaggtgctttcatttttgcttgaaaaagggaaggcggcgtcggttgccgaactgcaa
gcggtgcttggcgtctcctcagcgccgctgaaagcgctcgtcgacaaaggatttgtggtg
ctgaacgatgtcgaggtgtaccgcgacccgtacgagcatcgcacgtttcagccgagcgag
ccgccggcgctcacccaggcgcaagaggcggcgttggcgaagatcgccgcttcggtgcgc
gctggggagcatcgcacgtttttgctgtatggcgtcaccggcagcgggaagacggaagtg
tatatgcaggcgattgatgaagcgttgcgccaaggaaaggaagcgatcgttctcgtgccg
gaaatttcgctgacgccgcaaatggtcgagcgcttcaaaagccggttcggctcgaaagta
gcggtgcttcacagcgggctgtcggtcggcgaaaaatatgacgaatggcggaaaattcac
cggaaagaagtgcagcttgtcgtcggtgcgcgttcggctgtgtttgccccatttgaaaac
ttagggatgatcatcatcgatgaggagcatgagacgagctacaagcaagaagaaatgccg
cgctatcatgcgcgcgatgtcgccatttaccgcgctcgccgccacagctgcccggtcgtg
cttggcagcgccaccccctcgcttgagacgttcgcccgcgccgccaaaggggtgtacgag
ctgctcgagctgccggagcgcatcagcgaccgcggcctgccggacgttcatgtcgtcgat
atgcgcgaggagctgcgaagcggcaaccgttcgatgttttcacgccggttgcttgacgaa
ttgcgccgccggcttgagcgcggcgagcaggcagtgttgctgttgaatcgacgcggttat
tcgacgtttgtcatgtgccgcagctgcggctatgtcatccgctgtccgcactgcgacatt
tcgttgacgtaccatcgcgccggcgagcggatgaaatgccattattgcgggcatgaagag
ccgcttgtccctcgctgtccatcgtgcggaagcgaacacatccgctttttcgggaccggc
acgcaaaaagtggaagaagaactgacgaggttgctgccgaaagcgcgcgtcatccgcatg
gatgtcgacacgaccggccgcaaaggggcgcatgaagagctgctttcccgttttgccgcc
aaggaagccgatattttgctcggcacgcaaatgatcgccaaaggacttgattttccgaac
gtcacgcttgttggtgtgctggcggccgacacgatgcttcatttgcccgatttccgcgcc
gcggaaaaaacgttccagctgttgacgcaagtgagcgggcgcgccgggcggcacgagctg
cccggcgaagtcatcattcagacgtatacgcctgaccactacagcattgaactggccgcc
cgccacgactaccgcgccttttaccagcgggagatggcgctgcgcaaagcgcacggctat
ccgccgtactattatttgacgctcattaccgccgcccacgaagaggcgccggctgcggcc
aaagcggcggaaaagatcgccgcctatttgcgcaagcatctgtcgcacgaagcggtcgtt
ctcggcccggttgcctcgccaatcgcccgtcttcacgatagatatcgctaccaatgcatg
ataaaatacaaacgggagccgaatttgaccgcggcgctcaaggcggtcatcgaccgctac
caagccgatgccgcccatggcggagtgacgattacggtcgacacgaatccgtatatgatg
atgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (20)   
   Pfam (20)   
All databases (80)   

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