KEGG   Trichlorobacter lovleyi: Glov_1025
Entry
Glov_1025         CDS       T00708                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
glo  Trichlorobacter lovleyi
Pathway
glo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:glo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Glov_1025
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:glo03021]
    Glov_1025
   03019 Messenger RNA biogenesis [BR:glo03019]
    Glov_1025
Transcription machinery [BR:glo03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Glov_1025
Messenger RNA biogenesis [BR:glo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Glov_1025
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_22 OB_RNB AAA NACHT AAA_25 ATPase_2 Spore_III_AA
Other DBs
NCBI-ProteinID: ACD94748
UniProt: B3E624
Position
1066139..1067386
AA seq 415 aa
MNLQDLKNKKISELNGIARDLSIEGASGLRKQDLIFAILNAQTEQNGSIYGEGVLEILQD
GFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVSGQIRPPKEGERYFALLKVETIN
FETPEAGRDKTLFDNLTPLYPEEKLKLETAPDNYGMRVMELVSPIGKGQRGLIVAPPRTG
KTMLIQNIANSIAANHPEVYLIVLLIDERPEEVTDMQRSVNGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVLPPSGKILTGGVDANALQKPKRFFGA
ARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEVHLDRRLVEKRTFPAIDINKS
GTRKEELLIERTMLNRIWILRKILHPMNVVDAMEFLLDKLSETKTNQDFIDSMSK
NT seq 1248 nt   +upstreamnt  +downstreamnt
gtgaacctccaggacttgaagaacaaaaaaattagcgaactgaatggtattgcccgtgat
ctgagtattgagggtgcttcagggcttcgaaagcaggatttgatctttgccatcctgaat
gcccagactgaacagaacggttcaatctatggggagggggttctggagatactgcaggat
ggttttggcttcctgcgggccccggactataactatctgcccggcccggacgatatctat
gtctcccccagccagatccgtcgttttaacctgcgcaccggtgatacggtctccggtcag
atcaggccgcccaaagagggtgagcgttattttgccctgctgaaggttgagacgatcaac
tttgaaacccctgaggccggacgggataagaccctctttgacaacctgacgccgctctat
ccggaagaaaaactgaagcttgaaaccgccccggataattacggtatgcgggtgatggag
ctggtctcgccgatcggcaaggggcagcgtggtctgatcgtggcgccaccccggaccggc
aagaccatgctgattcagaatattgccaactcgattgccgccaatcatcctgaagtctac
ctgattgtactgctgattgatgagcgtcctgaagaagtaacggatatgcagcgttcggtc
aatggtgaggtggtttcgtccacctttgatgaacctgccacccgtcacgtccaggtggcc
gagatggtgattgaaaaggccaagcgtctggtggaacacaagaaggatgtggtgattctg
ctggactcgattacccgtctggcccgcgcctacaacactgtgctgcctccctccggcaag
atcctgaccggcggtgtggatgccaatgccctgcagaagccgaagcgtttcttcggtgcg
gcccgcaatattgaggaaggcggttcactgaccatcatcgccactgccctggtggatacc
ggcagcaagatggatgaggtgatcttcgaggaattcaagggtaccggcaacatggaggtc
catctggatcgccgtctggtggagaagcgtaccttcccggccattgatatcaataagtcc
ggtacccgcaaggaagagctgctgatagagcggaccatgttgaaccggatctggatcctg
cgcaagattctgcacccgatgaacgtggtcgatgccatggagtttctgctggacaaactt
tctgagaccaagaccaatcaggattttatcgattcaatgagcaaatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system