KEGG   Geobacter metallireducens: Gmet_1386
Entry
Gmet_1386         CDS       T00295                                 
Symbol
rnr
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
gme  Geobacter metallireducens
Pathway
gme03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gme00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Gmet_1386 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gme03019]
    Gmet_1386 (rnr)
   03016 Transfer RNA biogenesis [BR:gme03016]
    Gmet_1386 (rnr)
Enzymes [BR:gme01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Gmet_1386 (rnr)
Messenger RNA biogenesis [BR:gme03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Gmet_1386 (rnr)
Transfer RNA biogenesis [BR:gme03016]
 Prokaryotic type
  tRNA degradation factors
   Gmet_1386 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1 Rrp44_S1 CSD
Other DBs
NCBI-ProteinID: ABB31620
UniProt: Q39VV4
Position
1550693..1552972
AA seq 759 aa
MKRNRETVQAVIRERGGSAPFRELMLAFGVTKGERQSFKGFVDKLVTDGHLVRLRGNRYA
LADGENLVTGRLTCHPDGYGFVIPEGGGDDVYIPARALAGSMHGDTVEVRVETFKAGGKK
EGRIVRTVTRGQTRVVGRFEQLKGFGVVVPDETRISQQIVISQQGIGRAKGGQTVVAEIT
AYPTEKRRPEGRIVEVLGWPDDPEVEVRTIIAKHGLPFEFPAEVLDEARAVPQAIGEKDL
QGRTDLREIVTVTIDGETARDFDDAVAVRKERGGNIRLWVSIADVSHYVKPDAPLDREAY
LRGTSVYFPDRCIPMLPEELSNGICSLNPRVERLTMTAEMLFTRSGTMKEATFYPSVIKS
DARLTYTIVKKILVDGDAEAMAAHQELVPHLEVMRELAQSLTEKRRKRGSIDFDLPEPQI
ILDLQGETVDIIQAERNLAHRIIEEFMLAANEAVASHIEAKGIPSLYRVHEPPDPAKLID
FQEFIFNFGFHFRMEGDRVEPAEIQRLLVETEGTPEERMINQVLLRCMKQARYSHENLGH
FGLAARCYTHFTSPIRRYPDLVVHRILKALLAGKITDKEIARLETTLPETAEQTSRRERV
AMEAEREIVALKKAQFMLQKIGEDFDGYITGVTSFGLFVELTEIFVEGMVHISTMGDDYY
RYVEKQHSLVGERTKETYRIGDKVRVTVAAVSIEKKQVEFVLAGLHERRPGASSPPGSEE
YPRIAVTGKRPRVLEERRRQSKGDKKGSGKGKGPRGRRR
NT seq 2280 nt   +upstreamnt  +downstreamnt
atgaaacggaatcgggaaacggtgcaggcggtgatccgcgagcggggcggttctgcccct
ttccgggagctgatgctggctttcggggtgaccaagggggagcggcagagtttcaagggg
ttcgtggacaaactcgtcactgacggccatctcgtgcgactcaggggaaaccgctatgcc
ctggccgatggggagaatctcgtgaccgggcggctcacgtgccacccggacggctacggt
ttcgtcattcccgaagggggaggggacgacgtctatatcccggcccgggcccttgccggg
agcatgcacggtgacacggtggaggtgcgggtcgagaccttcaaggccggcggcaagaag
gaggggcggatcgtgcggaccgtgacgcgggggcaaacccgtgtcgtggggcggttcgag
caactcaagggattcggggtcgtggttcccgatgaaacccgcatcagccagcagattgtc
atctctcagcagggaatcggtcgggccaaggggggacagacggtcgtggccgagatcacc
gcctaccccacggagaagcgcaggcccgaggggcgcatcgtggaggtgctggggtggccc
gacgaccctgaagtggaagtccggaccattatcgccaagcacgggctccccttcgagttc
cccgccgaggtgctggacgaggcccgggccgttcctcaggccatcggggagaaggatctg
caggggcgtaccgatctgcgggagatcgtgaccgtcaccatcgacggcgagacggcccgg
gacttcgacgatgccgtggcggtccggaaggagcggggggggaacatccgcctctgggtc
tccatcgccgatgtctcccattacgtgaagcccgacgcgcccctggaccgggaggcgtac
ctgcgggggacctcggtctactttcccgaccgctgtatccccatgctccccgaggagctt
tccaacggcatctgctccctgaacccccgggtggagcggctcaccatgacggcggagatg
ctcttcacccgcagcggcaccatgaaagaggccactttctacccgagcgtaatcaaaagc
gacgcccggctcacctacaccattgtaaaaaagattctcgtggacggcgatgccgaggcc
atggcggctcaccaggagctggtccctcacctggaagtcatgcgggagttggcccagagc
ctcacggagaagcggcgtaagcgggggagcatcgactttgatctccccgagccccagatt
atcctcgatctccagggggagaccgtcgacatcatccaggccgagcggaacctggcccac
cggatcatcgaggagttcatgctggccgccaacgaggcggttgcatcccacatcgaggca
aagggaatcccctccctctaccgggtccacgagccccctgacccggcaaagctcatcgac
ttccaggagtttatcttcaatttcggcttccacttccggatggagggggaccgggtggag
ccggcggagatccagcggcttctggtggagaccgaggggacgccggaggagcggatgatc
aaccaggtgctcctgcggtgcatgaagcaggcccgctacagtcacgagaacctggggcat
ttcgggcttgcggcccgctgttacacccacttcacgtcccccatccgccgctaccctgac
ctggtcgtccaccgcatcctcaaggcgctcctggccgggaagattaccgacaaggagatc
gcacggctggagacaaccctccccgaaacggcggagcagaccagccggcgggagcgggtc
gccatggaggcggagcgggagatcgtggccctcaaaaaggcccagttcatgctccagaag
atcggggaggacttcgacggctacatcaccggggtcacgtccttcggcctttttgtggag
ctgacggagatattcgtggaggggatggtccacatctccaccatgggtgacgactactac
cgctatgtggagaaacagcattccctggtgggtgagcggacgaaggagacctaccggatc
ggcgacaaggtgcgggtgaccgtggcggcggtgagcatcgagaagaagcaggtcgagttc
gtgctggccgggcttcatgagcggcggcccggtgcctcgtcgccgccggggtcggaggag
tacccgcggattgccgtcacggggaagcgcccccgggttcttgaagagcgacgacgccag
tcgaagggagataagaagggaagcggcaaggggaaggggccacgcgggaggcgccggtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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