KEGG   Glycine max (soybean): 100781563
Entry
100781563         CDS       T01710                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
gmx  Glycine max (soybean)
Pathway
gmx03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100781563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gmx03021]
    100781563
   03036 Chromosome and associated proteins [BR:gmx03036]
    100781563
Transcription machinery [BR:gmx03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100781563
   Coactivators
    SAGA/TFTC/STAGA complex
     100781563
Chromosome and associated proteins [BR:gmx03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     100781563
    STAGA complex
     100781563
    TFTC complex
     100781563
    SAGA complex
     100781563
    SLIK complex
     100781563
SSDB
Motif
Pfam: WD40 TFIID_NTD2 NBCH_WD40 ANAPC4_WD40 Ge1_WD40 Nup160 WD40_like Cytochrom_D1 PROPPIN PALB2_WD40 LisH
Other DBs
NCBI-GeneID: 100781563
NCBI-ProteinID: XP_003526182
UniProt: I1K8N0
Position
6:4668733..4675945
AA seq 663 aa
MEDEKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSVLEPDIANHLLAFSQLETGP
ARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDH
EMMHLRDLQKLEGVLSPNHLKEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILG
IINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANQINQKEIHWGLLEDSLEERLEKAG
ALLSDSEKGEGEAKEGENDETKKRSIEGGKQGASVKKVKKDKGGSATGKSAKPEANTIPS
APRVKPELPLPVIPAEAEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDG
SLIAGGFSDSSLKVWDMAKLGQQQTSSLSQGENEQIFGQGGGKRQYTLFQGHSGPVYAAS
FSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTAR
IWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRG
MILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSVIASGS
ADCTVKLWDVNTSTKVSRAEEKGGSANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALS
KSG
NT seq 1992 nt   +upstreamnt  +downstreamnt
atggaggacgagaaaatagttggatacgttacggcgttccttaagaagaaaggcttcacg
caaaccgagaagattttccaggaagaattccaacacaacaagtccaacacttccaattcc
gttctggaacccgacattgccaaccacctcctcgccttctctcaattggagactggtcct
gctaggttccacgacggctatagcagactaagaacatggacttattcttcactcgatttg
tacaagcacgagttgcttcgcgtgctttatccggtgtttatccactgcttcatggatctt
gtcgccaaaggacatgttcaagaagctcggaacttcttcaatactttccgcgaagaccat
gaaatgatgcacttgcgtgaccttcagaagttggaaggagttctctctcctaatcatctc
aaggaaatggaatttgctcactcgcttagaaagagcaaattcaacataaagatatgtgag
tattcctatgagcttttgttgcaacatctacacagtacgcaatccaccactatacttggt
attatcaatgagcatattaactttcaagtaacccctggtcaacctagcttaatttccgat
gatccggaagctgttacccttactggaagcagccaggaagcagcaaaccagataaatcaa
aaagaaattcattgggggttgcttgaagactctcttgaagaacggctggagaaagccggg
gccttgctttcagactctgaaaagggtgaaggggaagcaaaagagggggagaatgacgag
actaagaaaagatccattgaaggaggaaagcaaggtgcttcagtcaaaaaagtaaaaaag
gacaaaggtggaagtgcaactggaaaaagtgcaaaacctgaagctaacaccataccttca
gctcctcgagttaagccagaactccctttgcccgtaatcccagctgaggcggaacagtcc
gtccttgaggatttaaggaaccgtgtacagcttagcagtgttgcattgccatcagttagc
ttttacacatttatcaatactcataatggtttaagctgttcttcaatatcccatgacgga
tcattgattgctggaggattttctgactcatcactgaaggtttgggatatggcaaagctt
ggacaacaacagaccagttctctttcgcagggtgagaatgaacaaatatttgggcaaggt
ggtgggaaaagacagtatacattgtttcaaggtcattcaggccctgtttatgcagcctct
tttagtcctgtcggagattttatcctttcatcctcagcagactcgacaattcgattatgg
agcacaaaacttaatgccaatcttgtttgttataagggtcacaattaccctgtctgggat
gttcagtttagtcctgtggggcattattttgccagctcgtcacatgacagaactgctagg
atttggtccatggacaggatacagcccttaagaataatggcagggcacttgtctgatgtt
gattgtgtgcaatggcatgccaactgcaactacattgcaactggttccagtgataaaaca
gttcgactatgggatgtgcagagtggtgagtgtgtccgggttttcgttggccacaggggt
atgattttgtctttggcaatgtctcctgatggtcgctatatggcatctggcgatgaagat
ggcacaatcatgatgtgggacctctctagtggccgctgtctcacacctttgattgggcac
acatcatgtgtctggtccctcgctttcagttctgaaggttctgtgatagcatctggatct
gctgattgcactgtaaaattgtgggatgtaaatacgagcaccaaggtttctagggctgaa
gaaaaaggtgggagtgctaacagacttagatcgctgaaaactctaccaaccaaatctact
ccagtttactcattgcggttttctcgaaggaatcttctttttgcggctggtgctctatca
aaaagtggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (36)   

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