KEGG   Glycine max (soybean): 100793016
Entry
100793016         CDS       T01710                                 
Name
(RefSeq) general transcription factor IIH subunit 2
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
gmx  Glycine max (soybean)
Pathway
gmx03022  Basal transcription factors
gmx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100793016
  09124 Replication and repair
   03420 Nucleotide excision repair
    100793016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gmx03021]
    100793016
   03400 DNA repair and recombination proteins [BR:gmx03400]
    100793016
Transcription machinery [BR:gmx03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100793016
DNA repair and recombination proteins [BR:gmx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100793016
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 VWA IBR VWA_3 Tfb4
Other DBs
NCBI-GeneID: 100793016
NCBI-ProteinID: XP_006590708
UniProt: I1LHY4
Position
11:5502941..5508033
AA seq 419 aa
MNNVAERPLNKDVEDDDEDDGGGLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQ
YRRRLRTLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMVVMGKQVEAFIREFF
DQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQ
IPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCEETGGT
YSVALDESHFKELILEHAPPPPAIAEYSTANLIKMGFPQRSAEGSVAICTCHEEAKTGGG
YTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSQKDSSRSFPNT
CFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaataatgttgctgaaagaccacttaacaaagatgtagaggatgatgatgaggatgat
ggtggaggcctcgaagcctgggagagaacttatgcagaggatagatcatgggaggctttg
caagaggatgaatccggacttcttcgccccatagatactacagccatttaccatgcccag
tatcgcaggcgcctccgtacccttgctgccacagcggctactgcacggattcagaagggg
cttatacgatacctgtacattgttgttgacctgtccaaggcagcttcagagagagacttt
cgaccaagtaggatggttgtgatggggaaacaagttgaggcatttatcagggaattcttt
gatcagaatccacttagtcatgttggtctggtgactataaaagatgggattgctcattgc
ataacagaacttggtggcagtcctgagtctcacattaaagctttgatgggtaaactggaa
tgctcaggtgatgcctccttacaaaacgcactagagcttgttcttggatatctaaatcaa
atcccatcatatggtcatcgagaagttctgatcttatattcggctctcagtacatgtgat
cctggtgatctcatggaaaccatccagaaatgcaaaaagagtaaaataaggtgctcagtc
attggtcttgcagctgaaatgtttgtgtgcaaacatctctgcgaggaaactggagggact
tattctgttgcactagatgagtcccactttaaagagttgatcctagagcatgcccctcca
cctccagcaatagcagagtattctactgctaatttaattaagatgggtttcccacagcga
tcagctgagggttctgtggcaatttgcacatgtcatgaagaggccaagaccggaggggga
tacacttgtccaagatgcaaagttcgggtctgtgagcttcccactgaatgtcgtgtgtgt
ggattgacccttatttcttcaccccatttggctaggtcatatcatcatttatttcctata
gtgatgtttgatgaggtcactccatctcaaaaggattcaagccgcagttttcccaatact
tgttttggttgtcaacaaagtcttcttagtcagggaaacaagcctggactttctgttatt
tgcccaaaatgtaagcaacaattctgccttgattgtgacatctacgttcatgagagctta
cataactgcccaggctgtgaaagttccagacattctaagtctgtaactgcttcccaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (9)   
   UniProt (1)   
   RefSeq(pep) (8)   
DNA sequence (10)   
   RefSeq(nuc) (10)   
Protein domain (7)   
   Pfam (7)   
All databases (62)   

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