KEGG   Glycine max (soybean): 100813735
Entry
100813735         CDS       T01710                                 
Name
(RefSeq) polyadenylate-binding protein 2
  KO
K13126  polyadenylate-binding protein
Organism
gmx  Glycine max (soybean)
Pathway
gmx03015  mRNA surveillance pathway
gmx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gmx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    100813735
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100813735
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gmx03019]
    100813735
   03041 Spliceosome [BR:gmx03041]
    100813735
Messenger RNA biogenesis [BR:gmx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     100813735
   mRNA cycle factors
    Stress granule specific factors
     100813735
Spliceosome [BR:gmx03041]
 Complex C
  Other components
   Complex C specific factors
    100813735
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_3 RRM_7 MARF1_RRM1 DUF5062
Other DBs
NCBI-GeneID: 100813735
NCBI-ProteinID: XP_006574897
UniProt: I1JE12
Position
2:complement(9813483..9819219)
AA seq 648 aa
MAQVQVPPQNAIPGPNGGGAAGNQFVTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVC
RDLTSRRSLGYGYVNFSNPQDAARALDVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFI
KNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGML
LNDKQVYVGPFLRKQERESTADKAKFNNVFVKNLSESTTDDELKNVFGEFGTITSAVVMR
DGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSM
KEAADKYQGANLYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTP
DEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPP
GGPGIGQQIFYAQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPG
GRRTGAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGMPDVSMPGVAGGMFSVPYDVGGMPL
RDASISQQIPVGALATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTE
VLHLLESPEALKAKVAEAMDVLRNVAQQQAGGTADQLASLSLNDNLVS
NT seq 1947 nt   +upstreamnt  +downstreamnt
atggctcaggttcaggttccgcctcagaatgcgattcccggccccaacggtggtggtgct
gctggaaatcagttcgtgacgacgtcgctttacgtcggagatctcgacccgaacgtcacg
gacgcccagctgtatgatttgttcaaccaattggggcaagtcgtatccgttagggtttgc
agggacttgaccagtaggagatcgctcggttatggttatgtcaactttagcaacccgcaa
gatgctgccagagctttggatgttctgaacttcactcctctcaataacaggcccatccgt
atcatgtattcgcatcgtgatcccagtatccgtaaaagtgggcaaggaaatatatttatt
aagaatttggatagggcaattgaccacaaggcgttgcatgatactttttctacatttggg
aatatcctttcgtgcaaggtagctacagattcatctgggcaatcaaagggctatggcttt
gttcaatttgataatgaggaatctgcccaaaaggccattgagaagctgaatggaatgctg
ctgaatgataaacaagtgtatgtgggacccttccttcgcaagcaagagagagaaagtact
gctgacaaggcaaagttcaacaatgtttttgtgaagaatctgtcagaatcaaccactgat
gatgaattgaagaatgtttttggtgaatttggaactattactagtgctgtcgtaatgagg
gatggagatgggaaatcaaagtgttttggatttgtgaattttgagaatgctgatgatgct
gctagggctgttgaggctctcaatggcaaaaagtttgatgacaaagaatggtatgttgga
aaagctcaaaagaaatctgaaagggagaatgaattgaaacaacgatttgagcagagcatg
aaagaagctgctgataaatatcaaggggcaaacttgtatgtcaaaaatttagatgatagc
ctcggtgatgataaacttaaggagctgttctccccttttggtaccataacttcttgcaag
gttatgagagacccaaatggcataagtcgtggatcaggatttgttgcattctcaactcct
gatgaggcatctagagcactcttggagatgaatggcaaaatggtggtaagcaaacctctg
tatgtgactctagcccaacggaaagaagataggagagctagactgcaggctcagtttgct
caaatgcgacctgttggaatgccaccatctgtcggtcctcgtgtgccaatgtatccccca
ggtggtccaggtattggtcaacaaatattttatgcccaaggccctcctgctatcattcct
tcccagcctggatttgggtatcaacaacaacttgttcctggtatgaggccaggtgcagct
cccgtgccaaatttctttgtgccaatggttcagcagggacaacagggacagcgtcctggt
ggaaggcgtacaggtgcagtccagcagtcccagcagcccgttccaatgatgccacagcag
atgctacctagggggcgtgtctatcgttatcctcctggtaggggtatgccagatgtttct
atgcccggggttgctggaggtatgttttctgttccatatgatgtgggtgggatgccactg
cgtgatgcatcaatctcccagcaaattcctgttggggctttagcaacagctctggctaat
gcttctccagagcagcagaggacgatgctgggtgagaatctctacccccttgtggaacag
ttagagcctgacaatgctgccaaagtgacaggcatgcttcttgagatggaccagactgaa
gttctgcatttgctcgagtcgccagaagccctgaaagcaaaggtggcggaggcaatggac
gtcctaagaaatgttgctcagcaacaggctggcggtactgcggatcagctggcttcatta
tctcttaatgacaaccttgtttcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (30)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (47)   

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