KEGG   Glaciecola nitratireducens: GNIT_2062
Entry
GNIT_2062         CDS       T01632                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
gni  Glaciecola nitratireducens
Pathway
gni03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gni00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GNIT_2062 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gni03019]
    GNIT_2062 (pnp)
   03016 Transfer RNA biogenesis [BR:gni03016]
    GNIT_2062 (pnp)
Enzymes [BR:gni01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     GNIT_2062 (pnp)
Messenger RNA biogenesis [BR:gni03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     GNIT_2062 (pnp)
Transfer RNA biogenesis [BR:gni03016]
 Prokaryotic type
  tRNA degradation factors
   GNIT_2062 (pnp)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 KH_2 S1_2 KhpA-B_KH Dna2 PADR1_N
Other DBs
NCBI-ProteinID: AEP30171
UniProt: G4QLR5
Position
complement(2289066..2291180)
AA seq 704 aa
MTPITKTFQYGQHTVTLETGVIARQATAAVMASMDDTSVLVSVVGKKETKADQGFFPLTV
NYQEKAYAAGKIPGGFFKREGRPSESETLIARLIDRPIRPLFPNDFKNEVQIIITVVSAN
PEIPTDIISLIGTSAALAISGMPFSGPVGAARVGYKDGGYILNTRASEQEESQLDLVVAG
TKSAVLMVESEADILSEDVMLGAVMYGHEQSQTVINAITEFAAEVGTESWGWTAPAENTE
LKAKVKELAEAGMTEAYQISDKMVRKDAITAVTSKALETILEANPAQDPKEASDLLHDLE
SDVVRSRILAGEKRIDGRDPDTIRALNVATGLLPRTHGSALFTRGETQAIVAATLGTERD
AQMLDQLGGMATSRFMLHYNFPPYCVGETGFVGSPKRREIGHGRLAKRGMQAVMPSAEEF
PYVVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKSDENFVVLSDI
LGDEDHLGDMDFKVAGTTNGITALQMDIKIEGITHEIMQLALKQAKEARLHILEVMDSAI
SGHREEMSEYAPRIYTMKVDQDKIRDVIGKGGAMIRSITEASDTNIEIEDDGTIKIFATE
KAKADIAIDRIKAVTAEIEVGTVYNGKVMRIVDFGAFVEVLPGKEGLVHISQIAHDRVNK
VTDFLEEGQMVDVKVMEIDRQNRIRLSIKELLEKPAPAAPSEGE
NT seq 2115 nt   +upstreamnt  +downstreamnt
gtgactcctattactaaaacatttcagtatggtcagcatactgtcaccctagaaacgggt
gtaatcgcaagacaagcaactgcagcagtaatggcaagtatggacgatacgtctgtattg
gtttcagttgtcggtaaaaaagaaactaaagcagatcaaggtttcttcccattaacagtt
aactatcaagaaaaagcgtacgcagcgggcaaaatccctggtggcttcttcaaacgtgaa
ggtcgtccttctgaaagcgaaacattaatcgcacgtttaattgaccgtccaattcgtccg
ttatttccaaatgattttaaaaatgaagtgcaaataattattacagttgtttctgctaac
ccagaaatcccaactgacattatttctttaattggtacttctgctgcacttgctatttct
ggtatgcctttcagtggcccagtcggtgcggcgcgcgttggttataaagatggcggctat
attttaaatactcgtgcctctgagcaagaagaaagtcagttagaccttgttgttgctggt
actaaaagtgcagtattgatggttgaatctgaagcagacatattatctgaagacgtgatg
cttggtgcagttatgtatggtcatgagcaatctcaaaccgttattaacgcaattactgag
tttgctgcagaagtcggcacagaaagctggggctggacagcacctgctgaaaatactgag
ttaaaagcaaaagttaaagaacttgcagaagcaggtatgactgaagcttatcaaatttct
gataaaatggtgcgtaaagatgcgattactgctgtaacaagcaaagcattagaaaccatt
cttgaagccaatccggcgcaagatccgaaagaagcgagcgacctactgcatgacctagaa
agcgatgtggtacgttcacgtattcttgctggtgaaaagcgtattgacggacgtgatccg
gacaccatacgtgcactaaacgtcgcaactggcttgctgccaagaactcatggttctgca
ttattcacacgtggtgaaacacaagctatcgttgctgcaactttaggcacagagcgtgat
gctcagatgctagatcaacttggtggaatggcgactagccgtttcatgttgcattataac
ttccctccatactgtgtaggcgagactggttttgttggttcaccaaagcgtcgcgaaatc
ggccatggtcgtctagcgaaacgtggtatgcaagcggttatgccttctgctgaagaattc
ccgtatgttgtgcgtgttgtgtctgaaattactgaatctaacggttcatcttcaatggca
tcggtttgcggtacttcattggcattaatggatgcaggtgttccaattaaagcttctgtt
gctggtattgcaatgggcttagttaaatctgacgaaaacttcgttgtactttctgacatt
ttaggtgatgaagatcatcttggtgacatggactttaaagttgcaggtactactaacggt
attactgcacttcaaatggacattaaaattgaaggtattacgcatgagattatgcagtta
gcgctaaagcaagcaaaagaagctcgcttgcatatccttgaagtaatggattctgcaatt
tctggtcaccgtgaagaaatgtctgaatacgctccgcgtatatacacaatgaaagttgat
caagacaaaatccgtgatgttatcggtaaaggcggcgcaatgatcagatcgatcactgaa
gcttctgacaccaacattgaaattgaagatgacggcacaattaaaatctttgcaactgaa
aaagcgaaagctgatattgctattgaccgcatcaaagctgttacagctgagattgaagtt
ggtacagtgtataacggtaaagttatgcgtatcgtcgatttcggtgcatttgttgaagtg
ttaccaggcaaagaaggccttgttcatatcagccaaattgctcatgaccgcgtaaacaaa
gtaaccgacttccttgaagaaggccaaatggttgacgttaaagtcatggaaattgatcgt
caaaatcgtattcgtttaagtatcaaagagctattagaaaaaccagctcctgctgctcca
agcgaaggcgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (21)   

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