KEGG   Geodermatophilus obscurus: Gobs_3954
Entry
Gobs_3954         CDS       T01163                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
gob  Geodermatophilus obscurus
Pathway
gob03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gob00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Gobs_3954
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gob03019]
    Gobs_3954
   03016 Transfer RNA biogenesis [BR:gob03016]
    Gobs_3954
Enzymes [BR:gob01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     Gobs_3954
Messenger RNA biogenesis [BR:gob03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Gobs_3954
Transfer RNA biogenesis [BR:gob03016]
 Prokaryotic type
  tRNA degradation factors
   Gobs_3954
SSDB
Motif
Pfam: RNase_PH PNPase S1 KH_1 RNase_PH_C KhpA-B_KH KH_2 KH_5
Other DBs
NCBI-ProteinID: ADB76521
UniProt: D2SDV5
Position
complement(4150911..4153199)
AA seq 762 aa
MSAPTTQHSTAAAEFDPEDGVTTATAVIDNGSFGSRTITFETGRLAKQAAGSVVVTMGDT
MLLSATTAGRQPKEHFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRP
LRPTFAKGLRNEVQVVITVLSLDPDHLYDVLAINGASASTQLSGLPFSGPVGGTRVALVN
GQWVGFPTHAELEDAVFDMVVAGRVLPDGDVAIMMVEAEATEKTIELVAGGATAPTEEVV
AQGLEAAKPFIKALCEAQSALAEKAAKPVADFPRFLDYQDDVYAAVESHAGARLAEVQAI
AGKQERNDATDELKDGTVAALAGRFEGREKEVSAAFRALTKKVVRQRILRDKVRIDGRGL
TDIRPLSAEVEVLPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVNRKRYMHNYN
FPPYSTGETGRVGSPKRREIGHGALAERALLPVLPDREEFPYAIRQVSEALGSNGSTSMG
SVCASTLALLNAGVPLRAPVAGIAMGLVSDEVDGKTEYVALTDILGAEDAFGDMDFKVAG
TRDFVTALQLDTKLDGIPSDVLAQALTQARAARLHILDVMNEAIDAPDEMSPYAPRVTTV
RIPVDKIGAVIGPKGQMINAIQDETGADITIEDDGTIYVGASDGPSAQAAVDRINAIANP
QMPKVGERFLGTVVKTTPFGAFVSLLPGKDGLVHISKLGGGKRIGKVEDVVNVGDKLQVE
ITDIDARGKISLVPVAAEGDGAADAAPAGDAAPAADAAPAEA
NT seq 2289 nt   +upstreamnt  +downstreamnt
gtgtccgcacccaccacccagcacagcaccgctgctgcggagttcgaccccgaggacggg
gtcaccaccgccaccgcggtcatcgacaacggcagcttcggcagccgcaccatcaccttc
gagaccggccggctcgccaagcaggccgccggctccgtcgtcgtcaccatgggcgacacc
atgctgctgtcggccaccacggccggccgccagcccaaggagcacttcgacttcttcccg
ctgaccgtggacgtcgaggagcgcatgtacgccgccgggcgcatccccggctcgttcttc
cgccgcgagggccgtccctccgaggacgcgatcctcacctgccggctgatcgaccgcccg
ctgcgcccgaccttcgccaagggcctgcgcaacgaggtccaggtggtcatcaccgtcctg
tcgctggaccccgaccacctctacgacgtgctggccatcaacggcgcctcggcgtcgacc
cagctctccggcctgccgttctccggcccggtcggcggcacccgcgtcgcgctggtcaac
ggccagtgggtgggcttcccgacccacgcagagctcgaggacgccgtcttcgacatggtc
gtggcaggccgcgtcctcccggacggcgacgtcgcgatcatgatggtcgaggccgaggcc
accgagaagacgatcgagctggtcgccggtggcgccaccgcgccgaccgaggaggtcgtc
gcgcagggcctcgaggccgcgaagcccttcatcaaggcgctgtgcgaggcgcagtcggcg
ctggccgagaaggccgccaagccggtcgcggacttcccgcgcttcctggactaccaggac
gacgtctacgccgcggtggagtcgcacgccggcgcccggctggccgaggtccaggccatc
gccggcaagcaggagcgcaacgacgccacggacgagctcaaggacgggaccgtcgcggcg
ctcgcgggccggttcgagggccgcgagaaggaggtctccgccgccttccgcgcgctgacc
aagaaggtcgtccggcagcgcatcctgcgggacaaggtgcgcatcgacggccgtggtctc
accgacatccgcccgctctcggccgaggtcgaggtcctcccgcgggtgcacggctcggcg
ctgttcgagcgcggcgagacccagatcctgggcgtcaccacgctgaacatgctccgcatg
gagcagcagctggacacgctgtcgccggtcaaccgcaagcgctacatgcacaattacaac
ttcccgccgtactccaccggtgagaccggccgcgtcggctcgcccaagcgccgcgagatc
ggccacggcgcgctggccgagcgggcactgctcccggtgctgcccgaccgcgaggagttc
ccctacgcgatccggcaggtgtccgaggcgctgggctccaacggctcgacgtccatgggc
tcggtctgcgcctcgaccctggcgctgctcaacgccggtgtgccgctgcgcgccccggtc
gccggcatcgccatgggcctggtctccgacgaggtcgacggcaagaccgagtacgtcgca
ctgaccgacatcctcggtgccgaggacgccttcggtgacatggacttcaaggtcgccggc
acgcgggacttcgtcaccgcgctgcagctggacaccaagctcgacggcatcccgtccgac
gtgctggcccaggcgctgacccaggcccgcgcggccaggctgcacatcctcgacgtgatg
aacgaggccatcgacgcccccgacgagatgagcccgtacgcgccgcgggtcaccacggtg
cgcatcccggtcgacaagatcggcgcggtcatcggccccaaggggcagatgatcaacgcg
atccaggacgagaccggcgccgacatcaccatcgaggacgacggcacgatctacgtcggc
gcctccgacggcccctcggcccaggcggcggtggaccggatcaacgccatcgccaacccg
cagatgcccaaggtcggcgagcgcttcctcggcacggtcgtcaagaccacgccgttcggc
gccttcgtctccctgctcccgggcaaggacggcctggtgcacatcagcaagctgggtggc
ggcaagcggatcggcaaggtcgaggacgtcgtcaacgtcggcgacaagctgcaggtcgag
atcaccgacatcgacgcccgcggcaagatcagcctcgtgccggtggcggccgagggggac
ggcgccgctgacgccgccccggccggcgacgccgccccggcggccgacgccgcgcccgcg
gaggcgtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (16)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (32)   

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