KEGG   Geodermatophilus obscurus: Gobs_4518
Entry
Gobs_4518         CDS       T01163                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
gob  Geodermatophilus obscurus
Pathway
gob03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gob00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Gobs_4518
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gob03021]
    Gobs_4518
   03400 DNA repair and recombination proteins [BR:gob03400]
    Gobs_4518
Enzymes [BR:gob01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Gobs_4518
Transcription machinery [BR:gob03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Gobs_4518
DNA repair and recombination proteins [BR:gob03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Gobs_4518
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: ADB77068
UniProt: D2SHB4
Position
complement(4734220..4738125)
AA seq 1301 aa
MLDVNFFDELRIGLASGDDIRQWSHGEVKKPETINYRTLRPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKIIYFAAYLITSVDDETRHRDLPTIEAEISAEKHNLESRRDADVEARQQKLEAD
LAELEAEGAKSDVRRKVREGGEREMRQLRDRAQREIDRLEEVLDTFRKLEVKQLIADEGL
YRELRDRFGEYFEGGMGAAALQKLLADFDLDAEAASLRETIRSGKGQRKLRALKRLKVVA
AFLQTRNSPMGMVLDCVPVIPPDLRPMVQLDGGRFATSDMNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPADGRPITAPTQDMVLGLYHLTTLVPSRHEADG
GQPAAYGSTAEAIMAFDKGALGLQERALIRLDEVFGVDNGKVNEPWEQPEDWAPGQPALV
RTSLGRVLFNEALPEDYRFVNYQVPKKELGAIVNDLAERYPKVQVAATLDALKSAGFRWA
TRSGVTIAIDDVVTPPAKQEILDRHEAEARQIERQYERGVITDAERRGELIEIWTRARAE
VSQAMVDNFPTTNPVWVMVNSGARGNMMQISQIAGMRGLVANPKGEIIPRPIKANFREGL
SVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGVIMPIATS
VDGVLTRDPHAETSVYARALATDVVAEDGTLIAQANSDLGDVLIQALVDAGVSEVKVRCV
LTCESLLGTCATCYGRSLATGKLVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDI
THGLPRVVELFEARVPKGKAPIAELAGTVRIEDGEQFRKLTITPDDGSDEVVYDKLSRRS
RLRVEDGAHVEVGEQLTEGAVDPHEVLRIMGPREVQLHLVREVQEVYRSQGVSIHDKHIE
VIIRQMLKRVTIIDSGATEFLPGALVERTLFETENRRVVAEGNEPASARPVLMGITKASL
ATESWLSAASFQETTKVLTDAAIQGKSDSLLGLKENVIIGKLIPAGTGISRYRNITVEPT
EEARAAVYTMAGYDDGQYYSPDVFGQGSGEAVRLEEYDWRG
NT seq 3906 nt   +upstreamnt  +downstreamnt
gtgctcgacgtcaacttcttcgacgagctccgcatcggtcttgccagcggcgacgacatc
cgtcagtggtcgcacggtgaggtgaagaagcccgagaccatcaactaccggacgctgcgt
ccggagaaggacggtctcttctgcgagaagatcttcggtcccacgcgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgccaaggtgcggcgtgagcggatgggccacatcgagctggctgcgccg
gtcacccacatctggttcttcaagggcgtcccctcgcgcctgggctacctgctcgacctg
gcgcccaaggacctcgagaagatcatctacttcgcggcctacctgatcacctcggtcgac
gacgagacgcgtcaccgcgacctcccgaccatcgaggccgagatcagcgcggagaagcac
aacctcgagagccgccgcgacgccgacgtggaggcccgccagcagaagctggaggccgac
ctcgccgagctcgaggccgagggcgccaagtccgacgtccgccgcaaggtgcgcgagggc
ggcgagcgcgagatgcgccagctgcgcgaccgcgctcagcgggagatcgaccgcctcgag
gaggtgctcgacaccttccgcaagctcgaggtcaagcagctcatcgccgacgagggcctc
taccgcgagctgcgcgaccgcttcggtgagtacttcgagggcggcatgggtgccgcggcg
ctgcagaagctgctcgccgacttcgacctcgacgccgaggccgcctcgctgcgcgagacc
atccgcagcggcaagggccagcgcaagctgcgggccctcaagcggctgaaggtcgtcgcg
gcgttcctgcagacgcgcaactcgcccatgggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgcttcgcgaccagcgacatg
aacgacctgtaccgccgcgtgatcaaccggaacaaccggctgaagcgtctgctggacctc
ggggcccccgagatcatcgtgaacaacgagaagcggatgctccaggagtccgtggacgcg
ctgttcgacaacggccgccgcggccggccggtcaccggcccgggcaaccgtcccctcaag
tccctgagcgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggcctgcccaagcagatggccctggagctgttcaagcccttcgtcatgaagcggctg
gtcgacctcaaccacgcgcagaacatcaagtccgccaagcggatggtggagcgcgcgcgg
ccggtcgtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctgaaccgg
gcgccgacgctgcaccgtctgggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctg
tccagcaacaacatcctgagcccggccgacggtcgtccgatcaccgcgccgacccaggac
atggtgctgggcctgtaccacctgaccaccctggtgcccagccggcacgaggccgacggc
ggtcagccggcggcctacggctcgaccgccgaggcgatcatggcgttcgacaagggcgcg
ctgggtctgcaggagcgggcgctcatccgcctcgacgaggtgttcggcgtcgacaacggc
aaggtcaacgagccgtgggagcagccggaggactgggctcccggtcagccggcgctggtc
cggaccagcctcggccgggtgctgttcaacgaggccctgcccgaggactaccgcttcgtc
aactaccaggtgccgaagaaggagctcggggcgatcgtcaacgacctcgccgagcgctac
cccaaggtgcaggtcgcggcgacgctggacgccctcaagtccgccggcttccgctgggcc
acccgctcgggcgtcacgatcgccatcgacgacgtcgtgaccccgccggccaagcaggag
atcctcgatcggcacgaggccgaggcccggcagatcgagcgccagtacgagcgcggcgtc
atcaccgacgccgagcgtcgtggcgagctgatcgagatctggacccgcgcgcgggccgag
gtcagccaggcgatggtggacaacttcccgaccaccaacccggtctgggtcatggtcaac
tcgggcgcccgaggcaacatgatgcagatcagccagatcgccggtatgcgcggcctggtg
gccaacccgaagggcgagatcatcccgcggccgatcaaggccaacttccgggagggtctg
tccgtgctggagtacttcatctccacgcacggtgcccgcaagggcctggcggacacggcg
ctccgcaccgcggactccgggtacctcacccgccggctggtcgacgtctcccaggacgtc
atcatccgcgaggaggactgcggcaccgagcgcggcgtgatcatgccgatcgcgacctcg
gtcgacggcgtgctcacccgtgacccgcacgcggagaccagcgtctacgcccgtgccctg
gccaccgacgtggtggccgaggacggcacgctgatcgcgcaggcgaactccgacctgggt
gacgtgctcatccaggcgctggtggacgccggtgtctcggaggtcaaggtccgctgcgtc
ctgacctgcgagtcgctgctcggcacctgcgccacctgctacggccggtcgctcgcgacc
ggcaagctggtggacgtcggcgaggcggtcggcatcatcgccgcccagtcgatcggtgag
cccggcacccagttgacgatgcgcaccttccacaccggtggtgtcgcgggtgaggacatc
acccacggtctgccgcgtgtggtggagctcttcgaggcccgcgtccccaagggcaaggcc
ccgatcgccgagctggccggcactgtccgcatcgaggacggcgagcagttccgcaagctc
acgatcaccccggacgacggctccgacgaggtcgtctacgacaagctgtcgcgccggtcg
cggctgcgggtcgaggacggcgcccacgtcgaggtcggcgagcagctcaccgagggtgcg
gtggacccgcacgaggtgctgcggatcatgggcccgcgcgaggtgcagctgcacctggtg
cgcgaggtccaggaggtctaccgcagccagggcgtgtcgatccacgacaagcacatcgag
gtgatcatccgccagatgctgaagcgggtgaccatcatcgactcgggcgccacggagttc
ctccccggtgcgctggtcgagcggacgctgttcgagaccgagaaccgtcgggtcgtcgcc
gagggcaacgagccggcctcggcgcgcccggtgctcatgggcatcaccaaggcctcgctc
gcgaccgagtcgtggctgtcggccgcctccttccaggagacgaccaaggtgctcaccgac
gccgccatccagggcaagagcgacagcctgctcggcctcaaggagaacgtgatcatcggg
aagctgatcccggccggtaccggcatcagccgctaccggaacatcacggtcgagccgacc
gaggaggcccgcgccgccgtctacacgatggccgggtacgacgacgggcagtactacagc
ccggacgtcttcggtcagggcagcggcgaggccgtgcgcctggaggagtacgactggcgg
ggctga

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