KEGG T05722: D7316

Gordonia insulae: D7316_02205

Entry

D7316_02205       CDS       T05722

Symbol

rtcB

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

gom Gordonia insulae

Brite

KEGG Orthology (KO) [BR:gom00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:gom03016]
    D7316_02205 (rtcB)
Enzymes [BR:gom01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     D7316_02205 (rtcB)
Transfer RNA biogenesis [BR:gom03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    D7316_02205 (rtcB)
Prokaryotic type
   tRNA splicing ligases
    D7316_02205 (rtcB)

SSDB

Motif

Pfam:

RtcB Hexapep

Other DBs

NCBI-ProteinID:

AZG45609

UniProt:

A0A3G8JMD1

Position

2393883..2395079

AA seq 398 aa
MNTRFPVPLSGASASTLLWADEESIEHEARDQLRRVSTLPWVHGVRVMPDVHVGKGATVG
SVIAMRDAVCPAAVGVDIGCGMAAVRTDLVAADLPDDLSGLRSAIEAAVPVGFAAHKRPV
NLRPMQVGGGWGDFWARFGGLHRGVRQLDTRAHKQLGTLGGGNHFIEICLDDDGAMWIML
HSGSRNIGKELADRHMSVAASLPHNADLPDRDLAVFLSGTPEMDAYRHDLDWAQEYAARN
RRVMLALVCAAVRETFADRVVRFDDPISCHHNYVATEHIDGLELLVTRKGAIRAGDGELG
LIPGSMGTGSYVVRGLGSAESFYSASHGAGRRMSRSRARRMFTAEDLVEQTVGVESRKDA
GVVDEIPAAYKDIDAVIEAQTDLVEVVAHLRQVVCVKG

NT seq 1197 nt +upstreamnt +downstreamnt
atgaacacccgcttccccgttcccctttcgggcgcttccgcctcgaccctgctgtgggcc
gacgaggagtcgatcgagcacgaggcccgcgatcaactgcggcgtgtctcgacgctgccg
tgggtgcacggggtccgcgtgatgccggatgtccacgtgggcaagggcgcgacggtcgga
tcggtgatcgcgatgcgcgacgcggtctgcccggccgcggtcggcgtggacatcggctgc
ggtatggccgccgtccgcaccgatctcgttgccgccgacctgcccgatgacctgtcgggc
ctgcggtccgcgatcgaggcggcggtgccggtcgggttcgccgcgcacaagcgcccggtg
aacctgcggccgatgcaggtcggcggcggatggggcgacttctgggcccgcttcggtggc
ctgcatcgcggtgtccgccagttggatacgcgtgcacacaagcagctcggcaccctgggc
ggcggcaaccacttcatcgagatctgcctcgacgacgacggcgccatgtggatcatgctg
cactccggatcccgcaacatcggcaaggagctcgccgaccggcacatgtccgtcgccgcg
tcactgccgcacaacgccgatctgcccgatcgggatctggcggtgttcctgtccggcacc
ccggagatggacgcctaccgtcacgatctcgactgggcgcaggagtacgccgcgcgtaac
cgtcgggtcatgctcgcgctggtgtgcgccgcggtgcgggagaccttcgccgaccgcgtt
gtgcgattcgacgacccgatcagctgtcaccacaactacgtggccaccgagcacatcgac
ggcctcgagttgctggtgacccgtaagggcgcgatccgcgcgggcgacggcgagctcggc
ctgatcccgggctcgatgggtaccggctcgtatgtggtccgcgggctcgggtcggcggag
tcgttctactcggcgtcgcacggcgccggcagacggatgagccggtcccgggcacgcagg
atgttcaccgccgaggacctcgtcgagcagaccgtgggcgtcgagtcgcgcaaggatgcc
ggcgtggtcgacgagatcccggcggcctacaaggacatcgatgccgtgatcgaggcccag
accgacctggtggaggtggtcgcccacctgcggcaggtggtctgcgtgaagggttga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (10)   

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