KEGG   Gordonibacter pamelaeae: GPA_06960
Entry
GPA_06960         CDS       T02609                                 
Name
(GenBank) CRISPR-associated protein, Csn1 family
  KO
K09952  CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]
Organism
gpa  Gordonibacter pamelaeae
Brite
KEGG Orthology (KO) [BR:gpa00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:gpa02048]
    GPA_06960
Prokaryotic defense system [BR:gpa02048]
 CRISPR-Cas system
  Type II CRISPR-Cas system
   Type II signiture cas proteins
    GPA_06960
SSDB
Motif
Pfam: Cas9_REC Cas9_PI HNH_4 Cas9-BH DUF1524
Other DBs
NCBI-ProteinID: CBL03558
UniProt: D6E761
Position
665001..669116
AA seq 1371 aa
MNLRNVESYQVGLDIGTGSVGWAVLDDNGDLCRFKGKPTWGSRVFPTAETAAEARVHRGQ
RRRYDRRRQRIDLLQRFFADEVAKVDPEFFIRLNQARLHPENRDPAHADYRWPLFNGSNF
TEKDYYRQFPTIYHLRAHLLKSDEPADIRLVYLALHNIVKHRGNFLHQDNPSLSARNANV
GDAVEALCLALDEWCGAHDVECACDEAALAEALGDASLRPGEKRERAEAALGVEKAHKKL
AKAVSSAVVGYAAEFGHVFFAESEGSKFALSNDEKVEAYVCPDEGRDLFDAMRAVHSSYV
LMGILSEAQGELLSVCKVGEYERYKRDLETLKSLVRAYGPERYDEFFCGPFYEGTRDYDP
GKAQGYTKYNLGASKLSHEDFLKEVQKLLKDIGAQADERYADIERAIEAGAFLRRLKTSD
NGTIPYQLHLEEMDAIIERQAAFYPFLAQEKDKLKSLVSFRIPYYVGPLTQKNAARDGKG
EARFAWSSRKPGMEDARVYPWNWEDVIDKDQSAEDFIRRMTGTCTYLKGEPVLARCSLDY
ELFCVLNELAGARWTQDGDKSYRFDAADRLGIVEDLFKKRKRVTYEAAEKWLARTHGPES
GKSAGGAYHVSGGQGEDAFESQLSSHYDFCKILGVDELSDADEAMAEDIILWNTVFEDRS
ILKRKIKLAYGDRLGDAQVRKLCQKRYTGWGRLSGELLRGLRSATDNGPKTIMDILLEGD
PNHARRMGAAMNLMEILHDDLLEFQAKIDEHNRERALAVGGMSVDEVTGSPALRRGINQA
LRVVDEIAGIAGKPPAHIYVEVTRDEGARNKGRRTTSRYRALEAALSSIKAQCADVYAEL
KERDPRALDDERLTLYFMQCGKCMYSGDALDINKLQTYQVDHILPQSYVKDDSFENKVLV
RPDTNQRKGDTLLLDERLIARMRGFWRTLRDAELIGEKKFNNLTRTSVSDEQMKKFVSRQ
LVETGQMVKQVQQLLQARYPESEVQPVKAGVSHQLRVGCALAKSREINDFHHAHDAYLAC
QVGRFVQYRHSAVYSEPVKMAAVVKQFIKKQAEDYRRTRELPGSDGFIVSSFMTPGFDVK
TGEVFRDAWDAGAEIDRIRRCFDYKDCFISRMPEETHGAFWDATIYSPRAAGKTLSLPLK
RGLDPRKYGSYSREQFAYFFVYEAVKPKKKQRVLEFAPVPVRVASALANDPDALEDYARE
LAEAEGLVFERIRRRKVYKYQQIIVGDSRLYVTGREEVRNARQLAFSQDETKLICRIEQG
EECEEGELLDLFRSMQRKYLACAPRLARLMKVAEMEEGFIAATASGKREVLLSLTSIAAA
HRNSIDLKPIGRKGSSGQMKITFSKELSTNGILFVDSSVTGMFERRCRLGL
NT seq 4116 nt   +upstreamnt  +downstreamnt
atgaatctgcgcaacgtcgaatcgtatcaggtggggctggacatcggcacggggtcggtt
ggctgggcggtgctcgacgacaacggcgatctctgccgcttcaaaggcaagcccacttgg
gggagccgcgtgttcccgacggcggagaccgccgccgaggcccgggtgcatcgcggacag
cgacgccgctacgatcgccggcgccagcggatcgacttgctgcaaaggttcttcgcggac
gaagtggccaaggtggaccccgagttcttcatccgcctcaaccaggcgcgcctgcatccc
gagaaccgcgatccggcgcatgccgactaccgctggccgctgttcaatggaagcaacttc
accgagaaggactactatcggcagttccccaccatctaccacttgcgcgcgcacttgctg
aagtccgacgagcccgccgacatccggctcgtgtacctggcgctccacaacatcgtgaag
catcgcggcaacttcctgcaccaggacaacccctcgctgagcgcgcggaacgccaacgtg
ggagatgcggtggaggcgctgtgcctcgcgctcgacgaatggtgcggggcccatgacgtc
gagtgcgcatgcgacgaggccgccctggcggaggcgctgggcgacgcgtcgctgcgcccg
ggcgagaagcgggagcgggcggaggcggcgctcggcgtggagaaggcgcacaagaagctg
gccaaggcggtctcgtcggctgtggtggggtatgcggccgagttcgggcacgtgttcttc
gccgagtccgagggcagcaagttcgcgctctcaaacgatgagaaggtggaggcctacgtc
tgccccgacgagggacgcgacttgttcgacgcgatgcgcgcggtgcattcgtcctacgtg
ctcatgggtattttgagcgaggcgcaaggcgagcttctctcggtgtgcaaggtgggggag
tacgaacgctacaagcgcgatctcgaaacgctcaaaagcctggttcgcgcctacgggccc
gagcgctacgacgagttcttctgcgggccgttctacgagggcacccgcgactacgatccc
ggcaaggcgcagggctacaccaagtacaacctgggcgcgagcaagctctcgcacgaggat
ttcctcaaagaggtgcagaagctgctcaaggacatcggagcccaggccgacgagcgctat
gcggacatcgagcgcgcgatcgaggcgggcgcgtttttgcggcggctcaagacgagcgac
aatggaacgatcccctaccagctgcacctcgaggagatggacgccatcatcgagcggcag
gcggcgttttaccccttcctcgcgcaggagaaggacaagctgaaatcgctcgtgagcttc
cgcattccgtattacgtggggccgctgacgcagaagaacgccgcgcgcgatggcaagggc
gaggctcgtttcgcgtggtcgtcgcgcaagccggggatggaagacgcgcgcgtctacccc
tggaactgggaagacgtcatcgacaaggaccaaagcgccgaggactttatccgtcgcatg
acgggcacgtgcacttacctgaaaggcgagccggtgctggcgcgctgctcgctcgactac
gagctgttctgcgtgctgaacgagctcgccggagcccgctggacgcaggacggcgacaag
agctaccgcttcgacgcggccgatcgcctaggtatcgtggaagacctgttcaagaagcgc
aagcgcgtgacctacgaggcggcggagaagtggctcgcgcggacgcacgggcccgagagc
ggcaagtcggccggcggggcgtaccacgtatcgggcgggcagggcgaggacgcgttcgaa
tcgcagctctcctcgcactacgacttctgcaagatcctcggagttgacgagctttccgat
gccgacgaggccatggccgaggacatcatcctgtggaacaccgtgttcgaggatcgctcg
atcctgaagcgcaagatcaagctggcgtacggcgaccgcctgggcgacgcgcaggtccgc
aagctctgccagaagcgctacaccggttggggccgactgtcgggcgagcttctacgcggg
ctgcgcagcgctactgacaacgggccgaaaaccattatggacatccttttggaaggagac
ccgaaccatgcgcggcgcatgggggcggccatgaaccttatggagatactgcacgacgat
ctgctggagtttcaagcgaagatcgacgagcacaaccgcgagcgcgcgcttgcggtaggc
ggcatgtcggtcgacgaggtgacgggctctcccgctttgcgtcgcggcatcaaccaggcg
ctgcgagtcgtagacgagatcgccgggatcgccggcaagccccccgcgcacatctatgtg
gaggtgacgcgcgacgagggcgcccgcaacaagggaagacgcaccacgagccgctaccgg
gccctggaagcggcgctttccagcatcaaggcgcagtgcgccgacgtgtatgccgagctc
aaggagcgggatccgcgcgcgctcgatgacgagcggctgacgctctacttcatgcaatgc
ggcaagtgcatgtactcgggcgatgcgctcgacatcaacaagctgcagacgtaccaggta
gaccatatcctgccgcagtcgtacgtcaaagacgacagtttcgagaacaaggtgctggtg
cgtcctgacaccaaccagcgcaagggcgacacgctgcttctggacgagcggctcatcgcg
cgcatgcgcggcttttggcgcacgctgcgggatgcggagctcatcggcgagaagaagttc
aacaacctcacacgcacgagcgtgagcgacgaacagatgaagaagttcgtgagccgccag
ctggtggaaacgggccagatggtgaagcaagtgcagcagcttctgcaggcgcgctacccc
gagagcgaggtgcagccggtgaaggcgggcgtgtcgcatcagctgcgtgttggatgcgcg
ctggcgaagagccgcgagatcaacgacttccatcatgcgcacgacgcctatctggcgtgc
caggtggggaggttcgtgcagtaccgacacagcgccgtgtacagcgagccggtgaagatg
gccgcggtggtaaagcagttcatcaagaagcaggcggaggactatcgccgaacgcgagag
ctgccgggctcggacggtttcattgtgtcgagcttcatgacgccgggattcgatgtgaag
acgggcgaggtgttccgcgatgcgtgggacgccggggcagagatcgaccgtattaggcgt
tgtttcgactataaggattgtttcatctcacgcatgcccgaagagacgcatggagcgttt
tgggacgcgaccatctactcgccgagggcggcgggcaagacgctgagccttcctttgaag
agaggtcttgacccgcgcaagtacggcagctactcgcgcgagcagttcgcctacttcttc
gtgtatgaagccgtgaagcccaagaaaaagcagcgggtgttggagttcgcgccggtgccg
gtgcgggttgcatcggctttggcgaacgacccggatgcattggaagactacgcacgcgag
ctcgccgaggcggagggcttggttttcgagcgtatccggcggcgcaaggtgtacaagtac
cagcagatcatcgttggcgattcgcggttgtatgtcacggggagagaagaggtgaggaat
gccaggcagcttgctttttcacaagatgagacgaagctcatctgccgaattgaacaaggc
gaggaatgcgaggaaggggaattgctcgacttgttcagatcgatgcagcgcaaatacctt
gcatgcgcaccgcgtttggctcgcctcatgaaggtggctgaaatggaagaggggttcatc
gcggcaacagcctcgggcaagagggaagttctgctgtcgttgacgtcgatcgcggcggcg
cataggaacagcatagacttgaagccgataggccgaaaaggatcatcggggcagatgaaa
atcacgttctctaaagaactgtcgacaaatggcatcctcttcgtcgactcgtccgtcacc
ggcatgttcgagaggcggtgtcgccttggcctttag

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Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG ORTHOLOGY (1)   
   RefGene (48)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (60)   

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