KEGG   Gamma proteobacterium HdN1: HDN1F_03580
Entry
HDN1F_03580       CDS       T01300                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
gpb  Gamma proteobacterium HdN1
Pathway
gpb03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gpb00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HDN1F_03580 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gpb03021]
    HDN1F_03580 (rpoB)
   03400 DNA repair and recombination proteins [BR:gpb03400]
    HDN1F_03580 (rpoB)
Enzymes [BR:gpb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HDN1F_03580 (rpoB)
Transcription machinery [BR:gpb03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HDN1F_03580 (rpoB)
DNA repair and recombination proteins [BR:gpb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HDN1F_03580 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: CBL43941
UniProt: E1VGJ9
Position
453651..457721
AA seq 1356 aa
MAYSFTEKKRIRKAFGQINDAMDVPYLLAIQLDSYRKFLQLDKLAAGRGDDGLQAAFKSV
FPITSYSGSAALEFVEYVLGEPAFDVKECQLRGATYSAPLRVKLRLIIYDKDSPSKAIKD
IKEQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDLVYVRIDRRRKLPATVLLRALGYESEQILELFFDTNKVLVESGE
FKLELIPERLRGETALFDIKAGDTVVVESGRRITARHIRQLEKAELRSLLVPKEYLVGKV
LAKGVIDRSTGEVIAPCNAEVTDELLDKLVGLSVTSFETLYTNELDRGPFLSDTLRTDQT
TSALEALVEIYRMMRPGEPPTKDAAEGLFKNLFFSAERYDLSAVGRMKFNRRLGRKETTG
EGTLSREDIVAVLKTLVAIRNGQGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVERAVK
ERLSLAESEGLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGPG
GLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLAAFARANDYGFLESPYRKVTN
GRATDEVVFLSAIEESEYMVAQASAELDEEGNLVEDLVPVRHKNEFTVTTTENVEYMDVS
PRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSEKPLVGTGMEGTVARDSGVCV
VAKRGGLIDRVDASRIVVRVNEDEITDGEAGVDIYSLTKFTRSNQNTCINQKPLVHVGDR
VARNDILADGPSVDIGELALGQNMRVAFMPWNGYNFEDSIMLSERVVQEDRFTTIHIQEL
TCVARDTKLGPEEITADIPNVSESALAKLDEAGVVHIGAEVAAGDILVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPSGTSGTVIDVQVFTRDGVEKDQRALQIENAEIEKY
RKDLNDEFRIIQIATVQRLKKALLDRRVNGGAGFKRGDSLTQELLEGLDNSALFELRLAD
EDAAESLEKAKAYLDEVRSEQERKLANKKRKITTGDDLAHGVLKIVKVYLAIKRRVQPGD
KMAGRHGNKGVVSVIMPIEDMPHDENGVAVDVVLNPLGVPSRMNVGQILETHLGLAARGL
GERINRMLEEQREIFEIREFLDRVYNGDKQTRVNLKSLTDDEVRTLATNLRAGVPMATLV
FDGAKEQEIKEMLRLAGQPESGQMDLFDGRTGEKFNCKVTVGYMYMLKLNHLVDDKMHAR
STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTIKSDDVNGRTRVYK
NIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELEQD
NT seq 4071 nt   +upstreamnt  +downstreamnt
atggcatattcttttactgaaaagaagcggattcggaaagcctttggtcagatcaatgac
gcaatggatgttccttacctcctcgccattcaactggactcgtacaggaagttcctgcag
ttggataaacttgccgcgggtcgcggagacgatggcctgcaggcagcgttcaaatcagtt
tttccgatcaccagttattctggcagcgcagcgctcgagtttgtggaatatgttttaggt
gagccagcatttgatgtaaaggagtgccaacttcgtggtgccacctattccgcgcctttg
cgggttaagctccgtttgattatctacgataaggattccccgagtaaggcaattaaggat
attaaggagcaagaagtctatatgggggagatccccttaatgacggatacagggacattc
gtgattaacggcacggagcgagtgatcgtttctcagttgcatcgttccccgggcgttttt
tttgatcacgatcgtggaaagacgcattcttcaggcaagttgctttattccgcgcggata
attccgtaccgcggatcttggctagactttgagtttgatcctaaagatttggtttatgtt
cgaattgaccggaggcgcaagcttcccgcgactgtattgttgcgtgcattgggctatgag
tctgagcagattctagaattgttctttgatacaaataaggttcttgttgaaagcggcgag
tttaaacttgaattaatcccagagcgcttaaggggcgagaccgcacttttcgacataaag
gctggtgatactgttgttgtcgaatccggcagacgcataaccgcaagacatattcgacag
ctggagaaggcagaactgcggtccttgttggttccgaaggaatatctcgttggtaaagtg
cttgccaaaggcgttatagatcgatctacaggagaagtcatagcaccctgtaatgccgag
gtcacagatgaattgcttgataagcttgtcggcctcagtgtgacttcgttcgagacactt
tacacgaatgaacttgaccgagggccgtttctttctgacacattgcgcactgatcaaacc
actagcgctctcgaagctctggtcgaaatttatcgaatgatgcgccctggagaaccgcct
acgaaggatgcggcggagggtctgtttaaaaatctgttcttctcggccgagcgctatgat
ttgtctgcagtgggcaggatgaaattcaatcgccgcctaggtcgaaaggagacgacgggc
gaaggaaccttaagtagagaagacatagttgctgtattaaagacgctcgttgccatccgt
aatggtcagggtgttgttgacgatatcgaccatttaggcaaccgccgtgtgcgttctgtc
ggtgagatggccgaaaatcagtttcgtgtggggctagttcgcgtcgagcgcgctgtcaag
gagcgtttaagccttgcggagagtgaaggtttgatgccgcaggatttgatcaatgcaaag
ccagtagctgcagcgattaaggagtttttcgggtctagtcagctgtcgcagtttatggat
cagaacaacccgctatctgagattacacataagcgcagggtttctgcgcttgggcctggc
gggctcacgcgggagagggcgggctttgaggtgcgggacgttcatcccacgcattatggc
cgtttgtgccccatcgaaacgccggaagggccaaacattgggttaattaactcacttgca
gcgtttgctagggcaaatgactacggatttttggaaagcccttatagaaaggtgacgaac
ggcagagcaaccgatgaggttgttttcctctcggctattgaagaatccgagtatatggtt
gcgcaagccagcgcagaattagatgaggaagggaatctcgtcgaggatttagtgccggtt
cgccacaagaacgagttcaccgttacgactacagagaatgtagagtatatggacgtatcg
ccacgccaggtcgtttcggttgcagcgtccttgatcccgttccttgagcacgacgacgcg
aaccgagcactgatgggctcgaacatgcagcgtcaagcggtgccgactttacgctcggag
aaaccgcttgtaggaacaggcatggaaggcacggtagcgcgggattcaggcgtttgtgtc
gtggcaaaacgtggtgggttaattgaccgcgtagatgcttctcggattgttgttcgcgtg
aatgaggatgaaattaccgatggcgaggccggcgtagatatctacagccttacgaagttc
actcgttcaaaccagaatacctgtataaaccagaaaccactcgttcatgtcggagataga
gtcgctcgtaacgatattctcgctgacggaccttcggtggatatcggtgagcttgcgctt
ggtcaaaacatgcgcgtcgcatttatgccgtggaatggctacaacttcgaagactccatt
atgctttcggagcgggtcgttcaagaggatcggtttacgacgattcatatccaagagctc
acttgcgtggctcgcgatacgaagcttgggcctgaagaaataaccgccgacattcctaac
gtcagcgaatccgctttagcaaaacttgacgaggcgggcgtcgtacacatcggcgcggaa
gtcgcggctggcgatattctcgttggcaaagttactcccaagggcgagacccagcttacg
ccagaggaaaaattgcttcgcgcgatctttggtgaaaaggcgtcggacgttaaagacact
tcccttcgtgtcccgtcgggtacatctggcacggtgattgacgttcaagtgttcacgcgt
gatggggtcgagaaggatcagcgagcactgcaaattgaaaatgcagagatcgaaaagtat
cggaaagatctcaatgacgaatttcggatcatccagattgctactgtacagcgcctcaaa
aaggcgttattggataggcgcgtaaatgggggagcgggcttcaagcgaggcgactccctg
acccaagagttgctcgaagggttggacaacagcgctttgttcgagctaaggctcgccgat
gaagacgctgctgagtctcttgagaaagctaaagcctatttggatgaagtgcgctctgag
caagagcgcaagcttgcgaataagaaacggaaaatcactacgggtgacgatctcgctcac
ggtgttttaaagatcgtcaaggtgtatcttgcgataaagcgccgcgttcaacctggcgac
aagatggcaggccgacatggcaataagggcgtggtttcggtaattatgcctatcgaggac
atgccacacgatgagaatggggttgctgtagacgtcgtgcttaacccgttgggcgtacct
tctcgaatgaacgttggacagattcttgaaactcaccttgggcttgctgctcgtggctta
ggggagcgcatcaaccggatgcttgaagaacagcgcgagatctttgagatccgagagttc
ttggatcgtgtttacaacggtgataagcaaacccgtgtaaaccttaagagccttaccgat
gacgaggtgcggacgctcgcgacgaatttgcgagcaggtgtgccgatggcaacattggta
tttgacggtgcgaaggagcaagaaattaaagagatgttgcgtctcgcaggtcagccagaa
agcggccaaatggatttgtttgatggccgtacgggcgagaagtttaattgcaaggttacc
gtcggatacatgtacatgcttaagctcaatcacttggtggatgacaaaatgcatgcgcgt
tccacgggttcgtatagccttgtgactcagcagccgttgggtggtaaagcgcagtttggt
ggtcaacgttttggtgagatggaagtctgggcgctcgaagcatacggtgcggcctacacg
ctccaagagatgctcacgattaagtcagatgacgtaaacggaagaactcgggtttataag
aatatcgttgatggcgatcaccgtatggagccaggaatgccagaatcgtttaacgtgcta
gtaaaggaaattcgctcgctgggaattgatattgaacttgagcaggattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (54)   

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