KEGG   Gemmatimonas phototrophica: GEMMAAP_08790
Entry
GEMMAAP_08790     CDS       T04580                                 
Name
(GenBank) hypothetical protein
  KO
K03092  RNA polymerase sigma-54 factor
Organism
gph  Gemmatimonas phototrophica
Pathway
gph02020  Two-component system
gph02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:gph00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    GEMMAAP_08790
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    GEMMAAP_08790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gph03021]
    GEMMAAP_08790
Transcription machinery [BR:gph03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     GEMMAAP_08790
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_AsnC-type HTH_IclR HTH_23 Sigma70_r4 HTH_3 HTH_Crp_2 LacI HTH_31 HTH_AraC HTH_26 Phage_CII HTH_38 HTH_Tnp_ISL3
Other DBs
NCBI-ProteinID: AMW04908
UniProt: A0A143BIS2
Position
complement(2126930..2128426)
AA seq 498 aa
MKTGLQQNAGLRQELKVNPRLYQAMDLLYMPLLDLQQHLKQELLTNPFLELVEPEDEDDD
SSDAEDTTAEAQDLAEPETTTESEPEKTGDDDVDWEAVLLDGFETGGQREEHEQREWYEP
VTVATKDLSDHLTEQLSLIELTPLQAFLADEFVGNINDDGYLACPLEEIQRGINELLTRE
AEERDLDTDAPGFSDAQMLEMLQIIQDLDPPGVGARDLRECLLLQLRAAGQRESLAYRLV
EEAFDELIAHRWSELSKRFGISAQDVQSAHDEIAKLDPKPGLRFSASSDNYIIPDLVVDK
IDNEYHIFLNDGNLPRLKLSRTYQEIARDKKKFDTESKDFIASKLNSANWMIQAIEQRRQ
TMLKVMHYIVDRQKDFFERGVQALKPLTLREVAEAVGMHESTVSRVTNEKFVQTPRGVLP
LKFFFSSGLSTADGDDVSARGIKDQIEKLVAGEDTKNPLTDQAIVEILQQTGVQIARRTV
AKYRDQLGVLPARMRKRV
NT seq 1497 nt   +upstreamnt  +downstreamnt
atgaaaaccggactgcaacaaaacgccggcctccggcaagagctgaaagtcaatcctcgc
ctgtatcaggcgatggatttgctgtacatgcccctgctcgatctccagcagcatctcaaa
caggaactgctcaccaatcccttcctcgagttggtggagcctgaggacgaagacgacgat
tcgtccgatgccgaagacaccacggcggaagctcaggatctggccgagccggaaacgaca
acggaatcagaaccggagaagaccggtgacgatgacgtggattgggaagccgtgctgttg
gatggttttgaaaccggtggccagcgcgaagaacacgagcaacgggaatggtatgagccc
gtgacggttgcgaccaaggatctttcggatcacttgaccgagcagctgtctctcattgag
ctcacgccgctgcaggcgtttcttgccgacgaatttgtcggcaacatcaacgatgacggg
tatctggcgtgcccactcgaggagatccagcgcggtatcaacgagctcctcacgcgtgaa
gccgaagagcgcgacctcgacaccgacgcgcccggtttctcggacgcgcagatgctggaa
atgctgcagatcatccaggatctcgatccccccggcgtaggcgctcgcgacctcagggaa
tgcctgttgctgcagctgcgtgcagccggtcagcgcgaatcactggcgtaccgtttggtg
gaagaggcctttgatgagctgatcgcccaccgctggagcgaactctccaagcgattcgga
atcagcgcgcaggacgtgcagagtgcgcacgacgagatcgccaagctcgatcccaagccc
gggctgcgcttcagcgccagcagcgacaattacatcattcccgatctcgtggtcgacaag
atcgacaacgagtatcacatcttcctgaacgacggcaaccttccgcgtctcaagctctcc
cgtacgtatcaggaaatcgcccgcgacaagaagaagttcgataccgagagcaaggacttc
atcgcgagcaagctcaattccgccaattggatgatccaggcaattgagcaacggcgtcag
accatgctcaaggtgatgcactacatcgttgatcggcagaaggatttctttgagcgaggg
gtgcaggcgctcaagccgttgaccttgcgcgaggtcgccgaggccgtcggcatgcatgaa
tccacggtcagccgcgtaacgaacgaaaaattcgtacagacgccccgtggagtcttgccc
ctcaagttcttcttttcgtccgggctctcaaccgctgatggtgacgacgtttctgcccga
ggcatcaaggatcagattgaaaagctggtcgctggtgaagacaccaagaacccgctgacc
gatcaggccatcgtcgaaattctgcagcagactggcgtccagattgcgcggcgcacggtg
gccaagtaccgtgaccaactcggcgtactccccgcgcgtatgcgcaagcgcgtctga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (25)   

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