KEGG   Gemmatimonas phototrophica: GEMMAAP_09500
Entry
GEMMAAP_09500     CDS       T04580                                 
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
gph  Gemmatimonas phototrophica
Pathway
gph03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gph00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GEMMAAP_09500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gph03019]
    GEMMAAP_09500
   03016 Transfer RNA biogenesis [BR:gph03016]
    GEMMAAP_09500
Enzymes [BR:gph01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     GEMMAAP_09500
Messenger RNA biogenesis [BR:gph03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     GEMMAAP_09500
Transfer RNA biogenesis [BR:gph03016]
 Prokaryotic type
  tRNA degradation factors
   GEMMAAP_09500
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 PNPase KH_1 PCB_OB S1_2
Other DBs
NCBI-ProteinID: AMW06721
UniProt: A0A145Q373
Position
complement(2276154..2278346)
AA seq 730 aa
MHRIERTFAGRPLVIETGRMAKQAAGSAVVQFGETMVLAAVTVSENKSPLPFFPLTVEYK
EKTYAAGKIPGGFIKREGRPHDHEILAARIIDRSIRPLFPEGFQNEVQVFIYVISADQEN
DADVLALVAASFALNASKIPFLGPIAGVRVGRVQGHWVLNPTFQQLAFSDLELVVAGSKD
SIVMVEGGALEVSEEDVLESLRLSHDGIRELIAAQEELLAKVQQPKMSWTKAETPEGIVV
RVKELASGRVREALNQKDKHTRVEAVERTKKELAEGLLAEFPDNAKDIHTILGDVEYHEL
RAQVLDTNLRVDGRKPNEVRGISIDNGVLPRAHGSSLFTRGQTQALVAATLGTAKDAQRL
DSIKEAGEVTRSFMLHYNFPPFSTGEVRPMRGTSRREIGHGNLAERAIQGVLPDFADFPY
TIRIVSDVLESNGSSSMASVCGGSLALFDAGVPMKAAVAGVAMGLIKEGKKYAILTDILG
TEDHLGDMDFKVAGTTEGITSIQMDIKIEGLDLKIMEEALTQAKEGRLHILGEMSKSLAT
PRTELSKYAPRIVTVQIPVDKIGELIGPKGKNIRGIQEETGAELTVDDDGTVTIAAVGGE
SMERAKQMVQAITAEAVVGETYEGTVKTVTAFGAFVEIMPGTEALLHVSEMKWERVEKPE
DVCKKGDRVTVKLVDRDERGRLRLSMKALLPKPEGMADEPERPRREDGERSGGGDRGGRG
GRNGGGRDRR
NT seq 2193 nt   +upstreamnt  +downstreamnt
atgcatcgaatcgagcggacgttcgccggtcgccctctggttatcgaaaccggacgtatg
gcgaagcaggcagcgggttccgcagtagtgcagttcggcgagaccatggtgctcgccgcc
gtgacggtcagcgagaacaagagcccgctcccgttcttcccgctgacggtcgagtacaag
gaaaagacctacgccgccggcaagattccgggtgggttcatcaagcgcgaagggcgtccg
catgatcacgagatccttgcggcgcgcatcatcgaccgctccatccggccattgttcccg
gaaggcttccagaacgaagtgcaggtcttcatctacgtcatctcggccgaccaggagaat
gacgccgatgtactcgcgctcgtcgcggcttccttcgcgctgaacgcgtcgaagattccg
ttcctcggccccatcgccggcgtgcgtgtcggtcgcgtgcagggacactgggtgctcaac
cccacgttccagcagctcgcgttctccgacctggagctcgtggtcgccggttcgaaggat
tccatcgtgatggtggaaggtggcgcgctcgaagtgtctgaagaggacgtgctcgagtcg
ctgcgcctgtcgcacgacggcattcgtgagcttattgcggcgcaggaggaactgctcgcc
aaggtacagcagccgaaaatgtcgtggacgaaggccgagacgccggaaggcatcgtggtg
cgcgtgaaggagcttgcatcgggtcgagtgcgtgaagcgctcaatcagaaggacaagcac
acgcgcgtcgaggccgtggagcgcaccaagaaggaactcgccgaaggcctgctggcagag
ttccccgacaacgccaaggacattcacaccatcctcggcgacgtcgaatatcacgaactg
cgtgcgcaggtgctcgataccaatctgcgtgtcgacgggcgcaagccgaacgaagtgcgt
ggcatcagcatcgacaacggtgtgctgccgcgcgcgcatggctcgtcgctcttcacgcgt
ggtcagacgcaggcgctcgtggccgcgaccctcggtactgcgaaggacgcgcaacgtctc
gattccatcaaggaagcgggcgaagtcacgcgctcgttcatgttgcactacaacttcccg
ccgttctccaccggtgaagtgcgtccgatgcgtggcaccagccgccgcgaaatcggtcac
ggcaatctcgccgagcgtgccattcagggcgtgctccccgacttcgccgacttcccgtac
accatccgcatcgtctccgacgtgctcgagtcgaacggctcgtcgtcgatggcgtcggtg
tgtggcggctcgctcgccctgttcgatgccggcgtgcccatgaaggcggccgtcgccggc
gtcgcaatgggtctgatcaaggaaggcaagaagtacgcgatcctcaccgacatccttggc
accgaagatcatctcggcgatatggacttcaaggtcgcgggcacgacggaaggcatcacg
tctatccagatggacatcaagatcgaagggctcgacctcaagatcatggaagaggccctc
acgcaggccaaggaaggacgtctccacattctcggtgaaatgagcaagtcgctcgcgacg
ccgcggacggagctgtccaagtacgcgccacgcatcgtgacggtgcagatcccggtcgac
aagattggtgaactgatcggtccgaagggcaagaacatccgcggcattcaggaagagacg
ggtgccgagctcaccgtggatgacgacggtaccgtgacgattgctgctgtcggcggcgag
agcatggagcgcgcgaagcagatggtgcaggccatcaccgcggaagcggtggtcggtgag
acgtacgaaggcaccgtgaagacggtcaccgcgttcggcgccttcgtcgagatcatgccc
ggcactgaagcgctgctgcacgtctccgagatgaagtgggagcgtgtcgagaagcccgaa
gacgtgtgcaagaagggtgatcgtgtcacggtcaagctcgttgaccgcgatgagcgtggc
cgcctgcgcctcagcatgaaggcgttgctgcccaagccggaaggcatggccgacgagccg
gagcgcccccgtcgtgaagacggtgagcgcagcggtggcggcgatcgtggtggacgtggt
ggacggaacggcggtggtcgcgatcggcgctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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