KEGG   Geobacter pickeringii: GPICK_10780
Entry
GPICK_10780       CDS       T03568                                 
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
gpi  Geobacter pickeringii
Pathway
gpi03030  DNA replication
gpi03430  Mismatch repair
gpi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GPICK_10780 (dnaE)
   03430 Mismatch repair
    GPICK_10780 (dnaE)
   03440 Homologous recombination
    GPICK_10780 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gpi03032]
    GPICK_10780 (dnaE)
   03400 DNA repair and recombination proteins [BR:gpi03400]
    GPICK_10780 (dnaE)
Enzymes [BR:gpi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     GPICK_10780 (dnaE)
DNA replication proteins [BR:gpi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     GPICK_10780 (dnaE)
DNA repair and recombination proteins [BR:gpi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     GPICK_10780 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon SidD_cat DUF655
Other DBs
NCBI-ProteinID: AJE03771
UniProt: A0A0B5BIA1
Position
complement(2391220..2394696)
AA seq 1158 aa
METPSFVHLHLHTQYSLLDGAIRLGDLVKKVKDHHMPAVAITDHGTMFGALEFYLKCRDK
GVKPIIGSEVYIAPGSRHVKEARGGEAGAGYHLLLLCENLTGYKNLSKLVSIGFKDGFYY
KPRIDKEVLAEHAEGLICLSACLKGEVAYLCERGKMEEALDVARWYADLFPDRYYIELQE
NTLPEQDKANKGLLEVARELALPLVATNDCHYLNREDARAHEVLLCIQTGKTMNDASRMR
FSADEFYVKTPEEMAAAFHYAPEAITNTVKIAERCNLELDLKTYHFPRYVPPEGQTLDDV
LEGEAHQGLEARLVAIKAKNPNLTPEQEEGYHKRLRIELDCIKQMGFPGYFLIVADFINW
AKDHGIPVGPGRGSAAGSLVAYSIRITDIDPIPYNLLFERFLNPERISMPDIDVDFCQDR
REEVIQYVTEKYGRDKVCQIITFGTMSARAVIRDVGRAMDMTYGEVDKIAKLVPEVLGIS
LDKALQQEPKLKEMGEADPRVKELLDVALCLEGLARHASTHAAGVVVAPDILEEFCPVYK
DQKSGSLTTQYSMKYVEKIGLVKFDFLGLKNLTVIDNAVKMIRVGKRPDFDIAALRDDDE
ESYKLLQAGNTTGVFQLESSGMKELLTKLKPSCFEDIIAVCALYRPGPLGSGMVDDFIDR
KHGKKKVVYDLPQLEPVLKDTYGVIVYQEQVMQIARSLGGYSLGGADLLRRAMGKKDPAE
MAKQRDIFLEGAKNGGIDLQKAGAIFDLMAKFAEYGFNKSHSAAYALVAYQTAYLKAHYP
VEFMAALLTEDMGNTDKVVKNISDCREMGIEVLPPDINASHLSFRVLGNSIRFGLGAVKN
VGESAIEAIIEARQEGEFKDIFDFCERVDLRKVNKRVVEALIKCGAFDSTKARRSQLMAV
LEDAMTIGQKIQQEKESAQVSLFGTEEIVRTNGNGKGKVQLPDLPEWDDKMLLGLEKEAL
GFFITGHPLGRYEKEIRRFATADTATLGERADKSEVKVCGVVASLKELITKKGDRMAFAT
LEDLVGSVEMVVFPETFAASSELLKSDDPLLVTGTLDKGEKSIKIMANEVVLLRDVSTRE
TKRVVFTLAAEGLERSRLESLRGIIARYPGGCRAAVAIEVPEQFRTVIAPADSCTVAPSE
EMVMEVKHLFGYNAVSFE
NT seq 3477 nt   +upstreamnt  +downstreamnt
atggaaacccccagtttcgtccatctccatctccatactcagtactcccttctcgacggc
gccatccgcctcggcgatctggtcaagaaggttaaggaccaccacatgccggcggtggcg
atcaccgaccacggcaccatgttcggcgccctggagttctacctcaagtgccgggacaag
ggggtgaagccgatcatcggctccgaggtctacatcgccccgggttcgcgccacgtgaag
gaggcgcgggggggtgaggccggcgccggctaccacctgctcctcctctgcgagaacctg
accggctacaagaacctctccaagctcgtctccatcggcttcaaggacggcttctactac
aagccgcggatcgacaaggaggtgctggccgagcacgccgaggggctcatctgcctctcc
gcctgcctgaaaggggaggtggcctacctctgcgagcgggggaagatggaagaggcgctg
gacgttgcccgctggtacgccgacctcttccccgaccgctactatatcgagctccaggag
aacaccctgccggagcaggacaaggccaacaaggggctgctggaggtggcgcgggagctt
gcgctgccgctggtggccaccaacgactgccactacctgaaccgcgaggatgcccgggcc
cacgaggtgctcctctgcatccagaccggcaagaccatgaacgacgcgtcgcggatgcgc
ttctccgccgacgagttctacgtcaagacccccgaagagatggccgccgcgttccactac
gcccccgaggcgatcaccaacacggtgaagatcgccgagcggtgcaacctggagctggat
ctcaagacctaccactttccccgctacgtcccccccgaggggcagaccctggacgacgtg
ctggaaggcgaggcccaccaggggctcgaggcgcggctcgtggccatcaaggcgaagaac
ccgaacctcaccccggagcaggaggaggggtaccacaagcgcctccggatcgagctcgac
tgtatcaagcagatggggttcccggggtacttcctgatcgtggccgacttcatcaactgg
gccaaggaccacggcatccccgtggggccggggcggggctcggccgccgggtcgctggtg
gcttactccatccggatcaccgatatcgatccgatcccctacaacctccttttcgagcgc
ttcctgaacccggagcggatctcgatgcccgatatcgacgtcgacttctgccaggaccgg
cgcgaggaggtgatccagtacgtcaccgagaagtacggccgcgacaaggtctgccagatc
atcaccttcgggaccatgtcggcccgggcggtcatccgcgacgtggggcgggccatggac
atgacctatggcgaggtggacaagatcgccaagctcgtgccggaagtcctcggcatctcg
ctggacaaggcgctccagcaggagccgaagctgaaggagatgggtgaggccgatccgcgg
gtgaaggagctcctcgacgttgccctctgcctcgaagggcttgcccgccacgcctccacc
cacgccgccggcgtcgtggtggccccggacatcctcgaagagttctgcccggtctacaag
gaccagaagagcggctccctcaccacccagtattccatgaagtacgtggagaagatcggg
ctggtgaagttcgacttcctcggcctcaagaacctgaccgtcatcgacaacgcggtgaag
atgatccgggtcgggaagcggcccgacttcgacatcgcggccctgcgcgacgacgacgag
gagagctacaagctgctgcaggccggcaacaccaccggggtcttccagctcgaatcctcc
ggcatgaaggagctcctcaccaagctcaagccttcctgcttcgaggacatcatcgccgtc
tgcgccctctaccggccgggccccctcggctccggcatggtggacgacttcatcgaccgg
aagcacggcaagaagaaggtggtctacgacctgccgcagctggagccggtcctgaaggat
acctacggggtcatcgtctaccaggagcaggtcatgcagatcgcccgctccctcggtggc
tattcgctggggggcgccgacctcttgcgccgcgccatgggtaagaaagacccggcggag
atggccaagcagcgcgacatcttcctggagggggcgaagaacggtggcatcgacctgcag
aaggccggcgccatcttcgacctcatggccaaattcgccgagtacggcttcaacaagtcc
cactcggccgcctacgccctggtcgcctaccagaccgcctacctcaaggcccactacccg
gtggagttcatggcggcgctgctgaccgaggacatggggaacaccgacaaggtggtgaag
aacatctccgactgccgcgagatgggaatcgaggtgctcccccccgatatcaacgcctcg
cacctctcgtttcgggtcctcggcaactccatccgtttcggcctcggcgccgtcaagaac
gtgggggagtcggccatcgaggcgatcatcgaggcgcggcaggagggggagttcaaggat
atcttcgatttctgcgaacgggtggacctgcgcaaggtcaacaagcgggtggtggaggcg
ctcatcaagtgcggggccttcgactccaccaaggcgagacgctcccagctcatggcggtc
cttgaggatgccatgaccattggccagaagatccagcaggagaaggagagcgcccaggtg
tcgctcttcggcaccgaggagatcgtccgcaccaacggcaacggcaaggggaaagtgcag
cttcccgacctccccgaatgggacgacaagatgctcctcggcctggagaaggaggccctc
ggcttctttatcaccgggcaccccctggggcgctacgagaaggagatcaggcgcttcgcc
accgccgacaccgccaccctcggcgaacgcgccgacaagagtgaggtgaaggtctgcggc
gtggtcgcctccctcaaggagctcatcaccaagaagggggaccggatggccttcgccacc
ctggaggacctggtcggttccgtggagatggtggtcttccccgagaccttcgccgcctcc
tccgagctcctcaagtccgacgatccgctgctggtcaccggcaccctcgacaagggggag
aagagcatcaagatcatggcgaacgaggtggtgctgctgcgggacgtgagcacccgggag
acgaagcgggtggtcttcaccctggccgccgaggggctggagcggagccgcctcgaatcg
ctgcgggggatcatcgcccgttaccccggcggctgccgggctgccgttgccatcgaggtt
ccggagcagttccgcactgtcatcgctccggccgattcctgcaccgtcgcgccgagcgag
gaaatggtgatggaagtgaaacacttattcggctataatgccgtctcttttgaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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