KEGG   Gordonia polyisoprenivorans: GPOL_c39870
Entry
GPOL_c39870       CDS       T01719                                 
Name
(GenBank) putative DNA repair helicase
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
gpo  Gordonia polyisoprenivorans
Pathway
gpo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gpo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    GPOL_c39870
  09124 Replication and repair
   03420 Nucleotide excision repair
    GPOL_c39870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gpo03021]
    GPOL_c39870
   03400 DNA repair and recombination proteins [BR:gpo03400]
    GPOL_c39870
Enzymes [BR:gpo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GPOL_c39870
Transcription machinery [BR:gpo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     GPOL_c39870
DNA repair and recombination proteins [BR:gpo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     GPOL_c39870
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom DEAD
Other DBs
NCBI-ProteinID: AFA74998
UniProt: H6MR94
Position
4544896..4546563
AA seq 555 aa
MTDGPLIVQSDKTLLLEVDHPDAASARAAIAPFAELERAPEHVHTYRVTPLALWNARAAG
HDAEQVVDALVTYSRYAVPQPLLMDIVDTMGRFGRLQLVKSPVHGLTLVSLDRAVLEEIL
RNKKVAPMLGARIDDDTVVVHPSERGRLKQILLKVGWPAEDLAGYVDGEAHPIGLDQGDW
HLRDYQEMAADSFWAGGSGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKRE
LVARTTLTEDEIGEYSGERKEIRPVTIATYQVMTRKSKGEYKNLDLFDSRDWGLIIYDEV
HLLPAPVFRMTADLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAP
AECIEVRVTLTDEERLQYAVAENEAKYKLCSTAHTKVNVVRSILARHRDSQTLVIGAYID
QLEELGRELDAPVIQGSTKNKEREALFDRFRSGELQTLVVSKVANFSIDLPEASVAVQVS
GTFGSRQEEAQRLGRLLRPKSDGGQAHFYSVVSRDTLDADYAAHRQRFLAEQGYAYRITD
ADDLLGPTIGEESAG
NT seq 1668 nt   +upstreamnt  +downstreamnt
gtgaccgatggacccctgatcgtgcaatccgacaagacgctgctgctcgaggtcgatcac
cccgacgcggcgtccgctcgcgcagcgatcgccccgtttgccgagctcgaacgcgcaccc
gaacacgtgcacacctaccgggtgaccccgctggcgctgtggaacgcgcgcgcggcgggc
cacgacgccgagcaggtggtcgacgcgctggtcacctactcgcgctacgcggtgccgcag
ccgctgctgatggacatcgtcgacaccatgggtcggttcggccgcctccagctggtcaag
agtcccgtccacggactgacgctggtgagcctcgaccgcgcggtgctcgaggagatcctc
cgcaacaagaaggtcgccccgatgctcggcgcccgcatcgacgacgacaccgtcgtcgtg
cacccgtccgagcgaggacgactcaagcagatcctgctcaaggtcggctggccggccgag
gacctcgcgggttacgtcgacggcgaggcgcacccgatcggcctcgaccagggcgactgg
catctgcgcgactaccaggagatggccgccgactcgttctgggcgggcggctcgggcgtc
gtggtgctgccgtgcggtgcgggcaagacgatggtcggcgcggccgcgatggccaaggcc
ggtgccaccacactgatcctggtcaccaacaccgtggcgggccgccagtggaagcgggaa
ctggtcgcccgcaccaccctgaccgaggacgagatcggtgaatattcgggcgagcgcaag
gagattcgcccggtcaccatcgccacctatcaggtgatgacgcgaaagtccaagggcgag
tacaagaacctcgatctcttcgactcccgcgattggggcctgatcatctacgacgaggtg
cacctgctcccggcgccggtcttccggatgaccgccgacctgcagtcccgccgacgactc
ggcctcaccgcgaccctggtccgcgaggacggccgcgagggcgacgtgttctccctcatc
ggccccaagcgctacgacgcgccgtggaaggacatcgaggcccagggctggatcgcgccc
gccgagtgcatcgaggtgcgggtgacccttaccgacgaggaacgactgcagtacgccgtc
gccgagaacgaggcgaaatacaagctctgctcgacggcgcacaccaaggtcaacgtcgtg
cggtcgattctggcgcgccacagggattctcagactctggtcatcggcgcctacatcgac
cagctcgaggaactcggccgcgaactcgatgccccggtgatccagggatcgaccaagaac
aaggagcgtgaggccctgttcgaccgcttccggtccggcgagttgcagaccctcgtggtg
tccaaggtcgcgaacttctcgatcgatctgcccgaggcgtcggtggccgtgcaggtgtcg
ggcaccttcggttcccggcaggaagaagcgcagcgcctcggacgcctactgcgaccgaaa
tccgatggcggacaagcacacttctattcggtggtctcccgcgacaccctcgacgccgac
tacgccgcccaccggcagcgcttcctcgccgagcagggctacgcctaccggatcaccgac
gccgacgacctcctcgggcccaccatcggtgaagaatctgcgggctga

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