KEGG   Paraglaciecola psychrophila: C427_0159
Entry
C427_0159         CDS       T02535                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
gps  Paraglaciecola psychrophila
Pathway
gps03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gps00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C427_0159 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gps03021]
    C427_0159 (rho)
   03019 Messenger RNA biogenesis [BR:gps03019]
    C427_0159 (rho)
Transcription machinery [BR:gps03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     C427_0159 (rho)
Messenger RNA biogenesis [BR:gps03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     C427_0159 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_22 AAA_25 AAA Spore_III_AA
Other DBs
NCBI-ProteinID: AGH42269
UniProt: K6ZPF9
Position
complement(146199..147464)
AA seq 421 aa
MNLTELKNKPISELVSLAEEMKLENMARARKQDIIFSILKSHAKSGEDIFGDGVLEILQD
GFGFLRSNDSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKDTERYFALLKISEVN
YDRPENARNKILFENLTPLHANERLIMERGNGSSEDITARVLDLAAPIGRGQRGLIVAPP
KAGKTLLLQNIAQSIAANHPECLLMVLLIDERPEEVTEMQRLVRGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRF
FGAARNIEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDY
NRSGTRREELLTTPDELQKMWILRKIVHEMSEIDAMEFLIGKLSMTKTNNEFFTAMRKQR
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaactcaagaataaaccgatcagtgaactggttagcctagccgaagaa
atgaagctagaaaacatggctcgcgctcgcaaacaagacattattttttctatcctaaaa
tctcacgctaaaagcggtgaagacatttttggtgatggcgtactagaaattcttcaagat
ggttttggatttttgcgttccaacgactcttcatacttggcaggcccagacgacatttat
gtctcgcctagtcaaatcagacgcttcaacttgcgaactggcgatacgatttcaggcaaa
atacgcccaccaaaagacaccgagcgttacttcgcattattgaaaataagtgaagtcaat
tatgatcgccctgaaaatgcacgtaataaaatattattcgaaaatttaacaccacttcac
gctaacgaacgcttaatcatggaacgtggcaatggtagtagcgaagatatcactgcacgg
gttttagacctagcagctccaattggccgcggccaacgtggtttgatagtcgcaccacct
aaagcaggtaaaacattactgctacaaaacatcgcccaatctattgccgctaaccatcca
gaatgtttgttgatggtattattaattgatgaacgaccagaagaagtgactgaaatgcag
cgcttagttcggggtgaagttattgcatctacttttgacgaaccagcgagtcgccacgta
caagtggctgaaatggtaatcgaaaaagccaaacgtttagtcgaacacaaaaaagacgtg
gtcattttgctagactcaatcacacgtttagcgcgagcttacaacacagttataccttca
tcaggcaaagtattaaccggtggtgtggatgccaacgcattgcacaaacctaaacgtttc
tttggtgctgcgcgtaacatcgaagaaggcggcagcttaacaatcattgccacagcattg
attgatactggttctaagatggatgaagttatctacgaagaatttaaaggtacgggtaat
atggaattgcacctgaaccgtaaaattgctgagaaacgtgtatttccagctatcgactac
aatcgttcaggtactcgtcgagaagagttattaaccacaccagacgaattacaaaagatg
tggatattacgcaaaatagtacatgaaatgtctgagatagatgccatggaatttcttatt
ggtaagttgtctatgacgaaaactaacaacgaattcttcactgcaatgcgtaaacaaaga
agctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (27)   

Download RDF
DBGET integrated database retrieval system