KEGG   Paraglaciecola psychrophila: C427_1936
Entry
C427_1936         CDS       T02535                                 
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
gps  Paraglaciecola psychrophila
Pathway
gps03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    C427_1936 (uvrA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gps03400]
    C427_1936 (uvrA)
DNA repair and recombination proteins [BR:gps03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C427_1936 (uvrA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      C427_1936 (uvrA)
SSDB
Motif
Pfam: ABC_tran UvrA_DNA-bind nSTAND1 AAA_29 DnaJ_CXXCXGXG AAA_21 AAA_16 RsgA_GTPase AAA_33 SLFN-g3_helicase Viral_helicase1 Semialdhyde_dhC
Other DBs
NCBI-ProteinID: AGH44045
UniProt: K7A743
Position
complement(1839529..1842078)
AA seq 849 aa
MSIEKKNSASVQKNFKNVPFDPDHCIQVRGARVHNLKNIDVDLPRNALVVFTGISGSGKS
SLAFGTLFAESQRRYLDSVSPYARRLIDQVDEPDVDAIEGLPPAVALQQQRGTPSVRSSV
GSVTTISNALRMLYSRAGKYPRGQDILYADAFSANTPQGACPRCHGIGRVFEVTEKLLVP
DDTKTIRERAIAAWPPAWQGQNLSRILVSLGYDIDKPWKMLPKKTRDWILFTDETPVVAV
YPEYNFAQISEAIERGEAPHYMGTFSSARRFILQSFTTTQSPRTKKRVSQFMQISKCSDC
NGKKLKQASLAVKFAGLDIGELSQLTLTELARLLGDATNINPTDSDLHPEKAIVAQRIAR
DILARVEALTKLGLGYLSLERSTPTLSPGELQRLRLATQIRSQLFGVVYVLDEPSAGLHP
ADTQALLGALDELILAGNSLFVVEHDVSVIRHADWIVDVGPDAGTHGGEVIYSGPIDGLR
KVTQSHTRRFLFTADAAVKPEQRQPSGWLKLAGIERNNLRGLNVEFPLGVMTTVTGVSGS
GKSSLVSQALVELVYDALGQKKTVEDPNGEVELLERELETSTVGLIVDGMQHLRRLVTVD
QKAIGRTPRSNLATYTSLFDHVRKLFASTRQSKARRYDVGRFSFNVVKGRCSNCEGVGFV
SVELLFLPSVYSPCPVCRGQRYNDKTLEITFRDKNIAEVLNLTVESAHDFFKNEPPILRA
LDALLQVGLGYLRLGQPATELSGGEAQRIKLATELQRTQRGDTLYVLDEPTNGLHPADVS
MLMSQLNGLIDAGNTVIMVEHDMQVASSSDWVIDIGPGAGDEGGLVVAQGPPAKVATSRT
SRTAPFLLA
NT seq 2550 nt   +upstreamnt  +downstreamnt
atgagcatagaaaaaaagaattcagcaagcgttcaaaagaactttaagaatgtccccttt
gatcctgatcactgtatccaagtgcggggggcacgggttcataacttgaaaaatattgac
gtcgacttacctcgcaatgcacttgtagtttttactggtatatctggttctggaaagtcg
tcgcttgcctttggcacgttgtttgccgaatcacaacgtcgctatctggattcagtatcg
ccttatgcccgtcgattgattgatcaagttgatgagccagacgttgacgcaatagagggc
ctaccaccagcagtcgcccttcaacaacaacgaggcacaccatcggtacgttcttctgtt
gggagtgtcacgacgatttccaatgccttacgcatgctctattctcgtgctgggaaatat
ccccgcggtcaggacatactctacgctgatgcattctctgccaatacaccacaaggtgcg
tgtcctcgatgccatggtattggccgggtgtttgaagtgactgaaaaattgctggttcca
gatgatacaaaaacaatccgagagcgagccatcgcggcatggccacccgcatggcaaggt
caaaatcttagccgcatacttgtttcacttggttacgatattgacaaaccttggaagatg
ctgccgaaaaaaacccgggattggatcttgtttaccgacgagacacctgttgtagcagtt
tacccagaatacaattttgcacaaattagcgaggcaatcgaaagaggtgaagcacctcat
tatatgggtacgttttcgagcgccagacgtttcatcctgcaatcatttaccacaacacaa
agcccgaggaccaaaaagcgcgtttcccagtttatgcagatttccaagtgctcggactgc
aatggcaagaaactgaaacaagcatcgcttgcggtgaagtttgctggactcgatattggt
gagctatcgcaattgacactaaccgaactcgctcgattattgggcgatgctaccaatata
aatccaacagatagcgacctgcacccagaaaaagccatcgtcgcgcaacggattgctcgc
gatattcttgcccgtgtcgaagcactcactaaacttggattgggctatctgtcactggaa
cgcagcacgcccactttgtcgccaggtgaactacaacgtttgcgtctagcaacacaaatc
cgctcgcaactgttcggtgtggtctatgttctcgacgaaccgtcagcaggtttgcacccc
gccgacacacaagcattactgggcgcgctggatgaactcatattagctggcaattcctta
tttgtagttgagcatgatgttagcgttattcgacatgctgactggattgtagacgtagga
ccagacgcaggaacccacggtggtgaagtgatatacagcggtccgatagacggcttgcgc
aaagtgactcaatcacacacccgtcgatttctttttacagctgatgctgcagtgaaacct
gagcagcgacagccgtccggttggctgaagttagcggggatagaacgaaataatcttcga
gggctcaatgttgaatttccactgggcgtaatgacgactgtcactggtgtgtcaggttcg
ggcaaatcgagccttgtgagtcaggcacttgtagaactcgtttacgatgcactgggacag
aaaaagactgtcgaggatcccaatggtgaggtcgagttattggaacgggagctagagaca
tctacggttggcctgattgttgacgggatgcagcacctgcgaagactggtcacagttgat
cagaaggcgattggtcgcactcctcgctcaaatcttgccacctacacaagtttgtttgat
catgtgcgtaaattgttcgcctcgactcgccagtccaaagcacggcgttacgatgttgga
cgtttttcatttaacgttgtaaagggccgctgctcgaattgcgaaggagtcggttttgtt
agtgtagagttactgtttcttcccagcgtttattcaccttgtccggtgtgtcgaggtcag
cgttacaacgacaagacgcttgaaatcaccttcagggataaaaatatcgctgaagtgctc
aacttaaccgtagaatccgcacacgacttctttaaaaatgaacctccaatattacgagca
ttagacgcgttactgcaagttggactcggctatctgcgactcggacaaccagcaactgaa
ttgtcgggcggcgaagcacaacgcatcaaactcgcaaccgaacttcagcggacacaacgc
ggcgataccctttacgttctcgatgaaccaaccaacggtttacacccagcagacgtgtca
atgttgatgtcacaattgaatggactaattgatgcaggcaacaccgtcatcatggtcgaa
cacgatatgcaagttgccagcagtagcgactgggttattgacatcggccctggtgctggt
gatgaaggcggacttgttgttgcccaaggtccacctgcgaaagtagcaacatcaaggact
agccgaacagctccttttttattggcatag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (57)   

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