KEGG   Paraglaciecola psychrophila: C427_2475
Entry
C427_2475         CDS       T02535                                 
Name
(GenBank) hypothetical protein
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
gps  Paraglaciecola psychrophila
Pathway
gps03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gps00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    C427_2475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:gps03400]
    C427_2475
Enzymes [BR:gps01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     C427_2475
DNA repair and recombination proteins [BR:gps03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     C427_2475
SSDB
Motif
Pfam: AAA_19 AAA_30 UvrD_C_2 Viral_helicase1 SH3_13 Helicase_RecD AAA_11 RecD_N AAA_22 UvrD-helicase UvrD_C SLFN-g3_helicase PIF1 AAA_16 T2SSE NTPase_1 PhoH AAA Herpes_Helicase nSTAND3 TrwB_AAD_bind AAA_28 Mg_chelatase AAA_5 AAA_18 Zeta_toxin
Other DBs
NCBI-ProteinID: AGH44584
UniProt: K6ZL94
Position
2338389..2340398
AA seq 669 aa
MLMQVQNNSALKDGLEQLLKMSKIRAIDMAFADFIYSEESAQDASDTSARECLTMLSAFV
SAQSGEQHSCIDLEKLGQPFLGVYRFPELSTMLSYIQNAVTFARLSATGISLNEPTAKPI
ILQDGKLYLQRYWQYESQLAAIIREKATKTLDLDITAAKVLLSDLFDEEHNNAEQGQTLD
WQKIAVCIAASQKLSFITGGPGTGKTTTVTKLLALLQGLAARKGNVLNIQLVAPTGKAAA
RLTESISAAKIKLPNALQANLPEQCQTIHRLLGAKPQSPHFRANAIHPLHLDVLVLDEAS
MVDLPLMAKLFAALPKDAKIILLGDQDQLASVETGSVLSDICAASDLQGDNPNNALLIYS
DAMQQHLTKLIYLPTSTAIPNLETNTSITKRSDIRGSVIQDNVVRLLKSHRFGENSGIGQ
LAKQVKVGQVNQSISLLNDEQFTDINWHQPIQTTPQTVANEILKTLITQLLPIYQQYTQA
IQQGDLRQAFKYWDQQQVLCAQKSGYWGVTQLNALIESELHKQGLIDNTKDFYIGRPVML
SKNDHQLKLFNGDVGIVMPDPDNAALTKVWFVTPEGDLRGLLPSRLPSLETLYAMTIHKS
QGSEFESVYLCLPPITVNNQGRGLNRELIYTGLTRAKKQFMLFAEAKALSVSLGQQCVRG
SGLAGRLLG
NT seq 2010 nt   +upstreamnt  +downstreamnt
atgttgatgcaagttcaaaacaattcagccttaaaagacggtcttgagcaattgcttaaa
atgtcaaaaatacgtgctatcgatatggcatttgcagactttatttacagtgaagagtcg
gcccaagatgcttcagacacgtcagctagagaatgcctaactatgctgtcagctttcgtg
agcgcccaatcaggtgaacaacacagctgtattgatttagaaaaactaggtcaaccattt
ttaggtgtataccgttttccagaattaagcacgatgctcagttatattcaaaacgcagtt
actttcgcacgcttgtctgcaacgggtattagcttaaatgaaccaacagcaaaacccatt
atcttacaagatggcaaactatacttgcagcgatattggcaatatgagtcgcaattagcc
gctataatcagagaaaaagcgactaaaacactcgacttggatataacggctgcaaaagtt
ttattaagtgatttgtttgatgaagaacataataatgcagaacaagggcaaactctagat
tggcagaaaatagcggtatgtatcgctgccagccaaaaactcagttttataacaggtggt
cccggtacaggtaaaaccaccacagtcacaaagttgttagcgttattacaaggacttgcc
gctcgaaagggaaatgtcctcaacatacaattggtcgcgccaacaggcaaagccgccgct
agactcacagaatctatcagcgcagcaaaaataaaattaccaaacgctttacaagcaaac
ctaccggaacaatgccaaaccattcatcgtttattaggtgctaaaccacagagcccgcat
ttcagagccaacgccattcacccattacatttggatgtactggtgctcgatgaagcatca
atggtcgacttacctttaatggcaaaactattcgccgcattgccaaaagatgcgaagatc
atcttgttaggcgatcaagaccaactcgcctcagtagaaacaggcagtgtgttatctgat
atttgcgctgccagtgacttacaaggtgataaccccaacaatgctttattgatttacagc
gatgctatgcagcaacacctaactaagttgatttatttacccacttcaacggctataccc
aatttggaaaccaacacttcaataaccaagcgaagtgatatacgaggtagtgttattcaa
gataacgtggtgaggttacttaaaagccatcgatttggtgaaaacagtggtattggccaa
ttggccaagcaagttaaagtagggcaggttaaccagagtattagtttattaaatgatgaa
caattcaccgatattaactggcatcaacctatacaaactacaccgcaaaccgtcgcaaac
gaaatattaaaaacacttatcactcaactgttgccgatttatcaacaatacacccaagcc
attcaacaaggtgacctacgccaagcatttaaatattgggatcaacaacaagtattatgc
gcacaaaaaagtggatactggggtgttacgcagttaaatgctctgattgagagcgaacta
cacaaacaaggcttaatcgataacaccaaagatttctatatcggccgacccgtcatgctg
tcgaaaaatgatcaccaactgaagttgtttaatggagatgtaggcatagtgatgccagac
cctgacaatgcggctttaactaaagtgtggtttgttacgcccgagggcgacttgcgcgga
ttactacctagccgattacctagtttagagacgttgtatgcgatgacgatccataagagt
caagggtcggaatttgagtcggtttatttatgtttgccgcctattacagttaataatcaa
gggcgagggttgaatcgagaattgatttatacgggactaactcgggcgaagaagcagttt
atgttatttgcagaagctaaagcgttgagtgtgagtttggggcagcaatgtgtgcgggga
agtggtttggctgggcggttgttggggtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (26)   
   Pfam (26)   
All databases (44)   

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