KEGG   Gossypium raimondii: 105769125
Entry
105769125         CDS       T04129                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB7
  KO
K03015  DNA-directed RNA polymerase II subunit RPB7
Organism
gra  Gossypium raimondii
Pathway
gra03020  RNA polymerase
gra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105769125
  09124 Replication and repair
   03420 Nucleotide excision repair
    105769125
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gra03021]
    105769125
   03019 Messenger RNA biogenesis [BR:gra03019]
    105769125
   03400 DNA repair and recombination proteins [BR:gra03400]
    105769125
Transcription machinery [BR:gra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     105769125
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105769125
DNA repair and recombination proteins [BR:gra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      105769125
SSDB
Motif
Pfam: SHS2_Rpb7-N S1
Other DBs
NCBI-GeneID: 105769125
NCBI-ProteinID: XP_052486729
Position
5:7020788..7025153
AA seq 274 aa
MLNCSFWTKAQNTVAIDNREKDLQAQGCETKKLNRNQTQGAQVQCHIMEPKERKRGEPYP
IKHLQLFDLTVLTDYHVKKSSDRENLCSQSYSKRPKRGVFFHIVLERNMQLHPRHFGRNL
RENLVSDLMKDAEGTCSGRHGFVVAITGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKG
XILEAVVTMVNKMGFFAEAGPVQFFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEV
RLKIIGTRVDATEIFCIGTTKDDFLGVINDPTTT
NT seq 825 nt   +upstreamnt  +downstreamnt
atgttgaattgtagtttctggacaaaagcccaaaacacggtggcaattgataaccgagaa
aaggatctacaagcacaaggctgtgaaacgaaaaagctaaacagaaatcaaacccaaggg
gcccaagttcaatgccatataatggagcccaaggaaagaaaaagaggcgaaccgtatcct
attaaacaccttcaactttttgaccttacagtccttactgactatcatgttaagaaaagt
tcagacagggaaaatctttgttctcaatcttattcgaagagaccaaaaaggggcgtgttt
ttccacatagtattggagaggaacatgcaattgcatcctcgccactttggtcgtaatcta
cgggaaaaccttgtatccgatctcatgaaagatgctgagggcacttgcagtggtagacat
ggttttgtggtggcaataacaggcatagagaacatagggaaaggcttgattcgagacggg
acagggtttgtgacattccctgtgaagtatcaatgtgttgtatttagaccatttaaaggg
nagatcttggaagctgttgttaccatggtgaacaagatgggattctttgcagaagctgga
cctgttcaatttttcgtttctaaccatttgattcctgatgatatggagtttcagtctgga
gatatgccaaattatactacctctgatggatcggttaagattcaaaaagatagtgaagtg
cggttgaagataattggaactcgagtagatgctacggaaatattctgtattggtaccaca
aaagacgatttcttgggtgtgattaatgatcccacaacaacttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (15)   

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