KEGG   Gossypium raimondii: 105772714
Entry
105772714         CDS       T04129                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
gra  Gossypium raimondii
Pathway
gra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105772714
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gra03021]
    105772714
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105772714
Transcription machinery [BR:gra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105772714
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 105772714
NCBI-ProteinID: XP_012449583
UniProt: A0A0D2RBK7
Position
6:complement(56941429..56956794)
AA seq 1966 aa
MEENSSSVILDGEIVGIKFCLATPKEILTASVSGFPINHVSQLSNSYLGLPLEFGKCSAC
GTSEPGQCEGHFGYIELPIPIYHPSHISELKRLLSLLCLKCLKLKNKFQMKSGSVAERLL
SSCCENTPQVSIKEVKTTDGACYLELKQPSRQSKTNWNFLERYGFRYGDHHTRTLLPCEV
VEILKRIPSQTRRKLSGKGFFPQEGYILQYLPVPPNCLSVPDVSDGVSVMSSDLSTSMLR
KVLKQVEIIKSSRSGTPNFESHEVEANDLQSAVEQYLQVRGTVKASRSIDARYGVNKDAS
DSSTKAWLEKMRTLFIRKGSGFSSRSVITGDPYKKVNEIGIPSEIAQRITFEERVNMHNM
RYLQNLVDNKLCLTYRDGGSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHK
HSLQALSVYVHDDHTVKINPLICGPLSADFDGDCIHLFYPQSLSAKAEVYELFSVEKQLL
SSHSGNLNLQLATDSLLSLRVMLKTFLFKKADAQQLSMFLSSALPEPAFLKCNHVAPCWT
AFQILQTAFPACLDCSSDRYLIGKSDILKVDFNKDLMQSVINEVVASIFYEKGPKEVLNF
FDSLQPLLMENIFAEGFTVCLEDFSVSREVIENIQKDIQVISPLLYQLRSTYNELVELQM
ENHIRVAKEPIADFILKTSSLGNLIDSRSDSAVNKVVQQIGFLGMQLSDKGKFYSKTLVE
DVAHQFQSIYPSDAIDYPSAEFGLIKSCFFRGLDPYEGIVHSISTREVMVRSTRGLSEPG
TLFKNLMAILRDVVICYDGTVRNVSSNSIIQFQYGLSARTRPQFPAGEPVGVLAATAMSN
PAYKAVLDSSPSSNSSWELMKEILLCKVSFKNDPIDRRVILYLKDCDCGRKYCQENAAYL
VKNHLRRVKLKDIAVDFIIEYQQQQIVSEIEAGLVGHILLNKDLLKELSVSVQEIHMKCQ
ETINSFRKKKKTAETFKRTDLFVSESCSIQQSCVDKWLDMPCLMFFFRNTNDDNLDSAIQ
ILADIIYPVLLQTVIKGDPRICSAKIIWVNPDATTWIRNPSKTQKGELALEVVLEKSAVK
QNGDAWRTVIDCCLPVLNIIDTHRSIPYAIKQVEQLLGISCAFEQAVQRLSTSVSMVTRG
VLKEHLMLLANSMTCCGNLIGFNSGGYKTLSRSLNIQVPFTEATLFTPRKCFERAAEKCY
DDSLSSIVASCSWGKRVAVGTGSRFDLLWNQESGSDQMSGMDVYNFLHMVSGAGGSNSNT
ACLGEEVDDLMDEWCLSPDHSTGLDKPVFEDAAEFENNLDGQSASANWEKDVSLDKVSDV
GWDASGWNKNAEDVDKFAAAATSSEKQNEWSGWGASKSNSQDVGWDALSGWNKNAEDGDK
FAAAATSSKKQNECSDWGASKSKSQDVVSPKVDVGWDALSAWHKNAEDGDNFAAAASSSK
KQSEWSDWGMSKSKSQDVSPKTDGTCMKEQTELSGWEMKKFDTRDVLPVEERASKPNGWD
SGASWGIMSKESEELDASAAAPWSGWGTKDSSPKKSLDKTSKSSSWDTVSSWGRKTAAVH
ESGFIGNDNQPGQGRIENEWDNKASQVKPVQSASGWNNKVTEEMVVQSTSSWDEKASWEK
PVQSMSGWVSSSAAGSDESPTKGCSKNSNWDQQKAQTMNNAWDQQKSPATNSSWDRQKSS
TANNSWDQQKPPANSSWDQEKSPTINNSWDQQKSPECSQGWGTLNDLNQPASSSGWDMPQ
GEDNTQSEKQHQWGQSKGSRRWASDANKKSRPLKPARMMNDDSSMAAMYTVTRQRLDMFT
SEEKDILLDVEPLMQSIRKIMHQTGYNDGDPLSADDQTFVLDNVLAHHPDKAVKMGAGID
YVMVNKHSLFLDTRCLYVVTTDGHKQDFSYLKCLENMIKGKYPDLAEAFVAKYFRKSRGN
RERGVAPENSQGNRDQSVTQDDNSQGNRDRSDRSVAQDDNEGEVKQ
NT seq 5901 nt   +upstreamnt  +downstreamnt
atggaggaaaattcttcgtcagttattttagatggtgagatagttggtataaagttctgc
ctggcaacccctaaagaaattcttacagcatcagtcagtggctttcctattaaccatgtt
agtcaactctcgaattcctaccttggtttgccccttgaatttggtaaatgtagcgcatgt
ggtacatcagaacctggacaatgtgaaggtcattttggatatattgaattaccaatacca
atataccatcctagccatatcagtgaattaaagcgactgttgagtttgctttgcttgaag
tgcctaaaattgaagaacaagtttcagatgaaaagtggcagtgtcgctgaaagattgcta
tcgtcctgttgtgagaatactccacaagtttcaatcaaagaggttaaaacaacagatggt
gcttgttatttggagttgaagcagccatctagacaatcaaaaactaactggaatttttta
gagagatatggttttcgctatggcgaccatcatactcgaactcttctgccttgtgaggtg
gtggaaatactgaagagaattccttcacagacaagacggaaactttctgggaaagggttc
ttcccacaagagggatatattttgcagtatttgcctgttcccccaaattgtttatctgtt
ccggacgtttcggacggcgttagcgtcatgtcctcggatctttctacatcaatgctgaga
aaggttctgaagcaagttgaaattatcaaaagttcaaggtctggtaccccaaattttgaa
tcgcatgaagtagaagctaacgatttgcaatcagcagttgagcaatatcttcaagttagg
ggtactgttaaagcatcccgcagcatagatgcacgatacggggttaacaaagatgctagt
gattcgtcaacgaaagcatggctagagaaaatgagaacactgtttattagaaagggttca
gggttttcttcacgcagtgtgattactggtgatccatacaaaaaggtgaatgagattggc
attccatctgaaattgctcagagaattactttcgaggagagggttaacatgcacaacatg
agatatttgcaaaatctggtggataacaagttgtgtttgacctacagagatggtggttct
acatattcattgagggaggggtcaaaggggcatacatttttgagacctggtcaggtggta
catcggcgaattatggatggagatattgttttcataaataggccaccgactacacataag
cattcattgcaggcactttctgtatatgtacatgatgatcatacagtgaagataaatccc
ctaatttgtgggccattaagtgctgattttgatggagattgtattcacttgttctatccg
cagtctttatcagcaaaagcagaggtttatgagcttttttcagtggagaagcagttgctt
agctcccatagtggcaacctaaatttgcagttggccactgattcattgttgtcactcaga
gttatgcttaagacatttttgtttaaaaaggcagatgctcaacaattgtctatgtttctc
tcttcagctttgccagaacctgcttttttaaagtgtaatcatgttgctccatgttggaca
gccttccaaattctgcagaccgcttttcctgcatgcctagattgctccagtgatagatac
ttaattggaaaaagtgatatattgaaagttgatttcaataaggaccttatgcagtctgtc
atcaatgaagttgtggcatctattttctatgagaagggtccaaaagaggttcttaacttc
tttgattctttacaacctttattgatggagaatatctttgcagagggcttcactgtttgt
ctagaagatttttctgtctctagggaagttatagaaaatattcagaaggatattcaggtt
atttctcccttgctttatcagttaaggtcaacttataatgaattagttgagttgcaaatg
gagaatcacattcgagtagccaaagagccaatagctgatttcatactaaaaacatcctct
ttgggtaatttaattgactctaggagtgattctgctgtcaataaggttgttcagcagatt
ggattcttgggaatgcaactttctgataaaggaaaattctactcgaagactttggttgaa
gatgtggctcaccaatttcaaagcatatatccttcagatgcaatcgattatccttctgct
gagtttggactgattaaaagttgctttttccgtgggcttgatccgtatgagggcattgtt
cattcaatatctacaagagaagtaatggttcgctccactagaggattgtctgaacctggg
accttgtttaagaatttgatggccatccttcgtgatgttgttatttgttatgatggcaca
gttagaaatgtcagtagcaattcaataatacaatttcaatatgggctaagtgctagaact
agacctcaattccccgctggtgaacctgtgggtgtcttagctgctactgcaatgtcaaat
ccggcatataaagcagtgcttgattcatctcctagtagcaattcttcttgggaactgatg
aaggaaatattgctttgcaaagtaagtttcaaaaatgacccaattgaccgccgtgtaatt
ctgtatttgaaagattgtgattgtgggagaaagtattgccaagaaaatgcagcatatctt
gttaagaatcatttgagaagagtcaaactcaaagatattgcagtagatttcatcattgaa
taccagcagcagcaaattgtatcagaaatagaggcaggccttgttgggcatatccttctc
aataaggatctattgaaggagttgagtgttagtgtgcaagagattcatatgaagtgccaa
gaaactattaactcctttcgtaagaagaaaaaaactgctgaaacttttaagaggacagat
ttgtttgtcagtgaaagttgttccatccagcaatcctgtgtggacaaatggcttgacatg
ccatgcttgatgttcttttttcgaaatacaaatgatgataatctagatagtgctatacaa
atcctggctgacatcatctaccctgttcttctacaaacagtgatcaagggtgaccctcgt
atctgttcagcaaaaattatctgggttaaccctgatgcaacaacttggataagaaatcca
agtaagactcagaagggtgaattggctttggaagttgttttggagaaatctgctgtgaag
cagaacggtgatgcctggaggactgtcatcgattgttgtcttccagtgctaaatataatt
gacacccataggtctataccttatgccataaagcaagttgagcaactgctcggaatttct
tgtgcttttgaacaagcagtgcagcgtctctccacttctgtgtcaatggtgacaagaggt
gttctaaaggaacacctcatgctcttagctaacagcatgacatgttgtggaaatttaatc
ggcttcaactctggtggttataaaacactatctcgctcattgaatattcaagtgccattt
accgaagcaacactgtttacaccaagaaagtgttttgaaagggctgctgagaaatgctat
gatgattccttgtcgagcatagttgcatcctgttcttggggtaaacgtgtggctgttgga
acaggatcacggtttgacctcctgtggaatcaggagtctggatctgatcaaatgagtgga
atggatgtctacaactttctgcacatggttagtggtgctggtggaagcaattctaatact
gcttgcctgggagaagaagttgatgatttaatggatgagtggtgcttgtctccagaccat
agcactggtttagataagccggtgtttgaggacgcagctgaatttgagaataatttagac
ggtcagtcagctagtgcaaattgggaaaaagatgtgtctttggacaaggtgtcagatgtt
ggttgggatgcatctggatggaataaaaatgctgaggatgttgacaaatttgctgcagct
gcgaccagttcggagaagcaaaatgagtggtctggttggggtgcgagcaaatctaactca
caagatgttggttgggatgctttgtctggatggaataaaaatgcagaggatggtgacaaa
tttgcagctgctgcaaccagttcgaagaagcaaaatgagtgttctgattggggggcgagc
aaatctaaatcacaagatgttgtctctccaaaagtggatgttggttgggatgccttgtct
gcatggcataaaaatgcagaggatggtgacaattttgcagcagctgcatccagttcaaag
aagcaaagcgagtggtctgattgggggatgagcaaatctaaatcacaagatgtctctcca
aaaacggatggaacttgtatgaaagagcaaactgaattgtctggttgggagatgaaaaag
tttgatacacgagatgtccttcctgtggaagagagagcctccaagcccaatggttgggat
tctggtgctagttggggaataatgagcaaagaatctgaagaacttgatgctagtgctgca
gctccatggtctggttgggggacaaaagattcctcccctaaaaaatctttggacaaaact
tccaaatctagtagctgggatactgtttcttcttggggaaggaagactgctgcagttcat
gaatctggcttcattggaaacgataaccagccgggccaagggagaattgaaaatgaatgg
gataataaagcaagtcaagtaaagccggtgcagtcagcatctggttggaataacaaagtg
acagaggaaatggtagttcaatcgacatctagttgggatgaaaaagcttcttgggaaaag
ccagttcagtcaatgtctggttgggtttcctcatctgctgcaggctcagatgagtcacct
acaaaaggctgtagtaagaatagtaattgggaccaacaaaaggcacagacaatgaataat
gcttgggaccaacaaaagtcacctgcaacaaatagttcttgggatcggcaaaaatcatct
acggcaaataattcttgggatcaacaaaagccaccagcaaatagttcttgggaccaagaa
aagtcacctacaattaataattcatgggaccagcaaaagtcacccgaatgttcacagggt
tggggcacccttaatgacttaaaccaacctgcaagttctagtggctgggatatgccacag
ggtgaggataacactcaaagtgaaaaacagcatcagtggggacagagtaagggctcacgt
cgttgggcttcagatgctaataagaagagtcgtcctttgaagccagctcgaatgatgaat
gatgattccagtatggctgcaatgtacactgttacaagacaaagactagacatgtttact
tctgaggagaaagatattctcttggatgttgagccactcatgcagtcaatcagaaaaata
atgcaccagactgggtacaacgatggggatccactgtctgccgatgatcagacgtttgta
cttgataatgttttagctcatcatccagacaaagctgtaaaaatgggtgctggtattgat
tatgtcatggtaaacaagcacagccttttcctggataccaggtgcctctatgttgtcaca
accgatggtcataagcaagatttctcttatctcaagtgtctggagaacatgatcaagggg
aaatatcctgatttggctgaagcttttgttgcaaaatatttccgaaaatctcgagggaac
cgtgagcgaggtgttgctccagagaattctcaagggaaccgcgaccaaagtgttactcaa
gatgataactctcaagggaaccgtgaccgaagtgaccgaagtgttgctcaggacgataat
gagggggaggttaagcagtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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