KEGG   Gossypium raimondii: 105773269
Entry
105773269         CDS       T04129                                 
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
  KO
K03093  RNA polymerase sigma-I factor
Organism
gra  Gossypium raimondii
Brite
KEGG Orthology (KO) [BR:gra00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:gra03021]
    105773269
Transcription machinery [BR:gra03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     105773269
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r4_2 PLAC9
Other DBs
NCBI-GeneID: 105773269
NCBI-ProteinID: XP_012450465
UniProt: A0A0D2V8E3
Position
6:18771098..18776482
AA seq 565 aa
MGFRLNLKGVFPVPSHFLPNYSPSRLPSSSSSSSSSSSSVRGKEASFNSTRLSFLSVISD
EGVFLSKDPPKAYASPAALQTLENGCSDKEEKVNIDKGPQSRNCSHVMVGKSHEPIRGNR
SSSCASPQTCKASRYNVLKDNLNVLEETFVDSDVLRLEREILLQLGRLGALNLFNIFLSH
KPSNIFDLSDVAANSVECNMNGLVDSEKDKIIVSSRKNKQRRKRREKAVETTIISTQLLP
TNTLHGRYQKPKRSSPKRMSDSRKRRLAVARNEVEMSKGVKVVANLERIRTTLEEETGRM
VSLSCWAEAAKLTEKALQQHLHYGWYCRDELIRTTRSLVLYFARNYRGLGIAHEDLIQAG
SIGVLQGAERFDHTRGYKFSTYIHYWIRKSISRMVARHARGIQVPCTLSRAIVQIQKARK
ALSKSHGKYPEEDEIAKITGLSLSKIRSANKCFRVVGSIDQKIGDCINAKYLEFIPDASI
CSPEKTVMRQHMKEDIHDLLNGLEKRERQVMVLRYGLTGSPPKSLEEIGRLFRVSKEWIR
RIEMKAMAKLRDKETCRNLSHYLDS
NT seq 1698 nt   +upstreamnt  +downstreamnt
atgggttttagattgaatctcaaaggtgttttcccagttccttctcattttcttcccaat
tattcaccttccaggcttccttcttcttcttcttcttcttcttcttcttcttcttctgtt
agagggaaggaggcttcttttaactcaaccaggctgtctttcctgtctgtaatatctgat
gaaggtgtgtttctatcaaaagatcctccaaaagcatatgcttcacctgcagctctgcaa
acattagaaaatggctgctcagataaagaagaaaaggtaaatattgacaagggaccacag
tcacggaattgttcccatgttatggttggtaaatcgcatgaaccgattagagggaacaga
tcttcctcgtgcgcaagcccacagacatgcaaggcatcacgttataacgtgcttaaggat
aatctcaacgttttggaggagacatttgttgattcagatgtgttaagattggagagggaa
atcctactacaactaggaaggcttggagctctaaatttattcaatatctttctgtctcat
aaaccttcaaatattttcgacctatctgacgttgctgccaatagtgtagagtgtaatatg
aatggtttggtggatagtgaaaaggacaagattatcgttagctctagaaaaaataaacaa
cgaagaaaaagaagagaaaaagcggtagaaactactataatttctacacagttgctgcct
accaacaccctacatggacgttatcaaaagcccaaacgttcttctcctaaaagaatgtca
gactctagaaagagaagattggcagttgctaggaatgaagtagaaatgtcaaagggtgtt
aaggtggttgcaaacttggagaggattagaacaactttggaagaggaaaccgggagaatg
gtcagcttgagttgctgggcagaagcagccaaacttactgagaaggcgctgcaacagcat
ttgcattatggttggtactgcagggatgagttaataaggactacacgctccttagtcctc
tactttgcaaggaactataggggtttgggaatagcccacgaagacttaatccaggcggga
agtataggagtcctccaaggtgcagaaaggtttgaccacacaaggggatacaaattttct
acctatatacactactggataaggaaatcaatttcgagaatggtggcacggcatgctaga
gggattcaagttccctgcacgttaagcagggcgatagtacagatacagaaagctaggaag
gcccttagcaaaagccatgggaaatacccagaagaggacgaaattgccaagattacgggt
ctttctttgtccaaaatcaggtcggctaataaatgcttcagagttgtgggttcaattgac
cagaaaattggagattgtatcaatgcaaaatatttggaatttattccagatgcatcaata
tgtagcccggagaaaactgtgatgaggcagcacatgaaggaagatattcatgatcttttg
aatggtctggaaaaaagagagaggcaagtgatggttctacgctatggactcacgggttct
cccccgaagtcactcgaggagattgggaggctttttcgtgtgagcaaagagtggataaga
aggatagagatgaaagcaatggcaaaattgagggataaagaaacctgcagaaatttaagc
cactatttggactcttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

Download RDF
DBGET integrated database retrieval system