KEGG   Gossypium raimondii: 105777924
Entry
105777924         CDS       T04129                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
gra  Gossypium raimondii
Pathway
gra04120  Ubiquitin mediated proteolysis
gra04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    105777924
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    105777924
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:gra04121]
    105777924
Enzymes [BR:gra01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105777924
Ubiquitin system [BR:gra04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105777924
  Multi subunit Ring-finger type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     105777924
SSDB
Motif
Pfam: WD40 zf-C3HC4_2 zf-C3HC4 WD40_like zf-C3HC4_3 zf-RING_2 zf-C3HC4_4 zf-RING_UBOX zf-RING_5 U-box zf-RING_10 zf-rbx1 Rad50_zn_hook DUF1664 zf-Nse
Other DBs
NCBI-GeneID: 105777924
NCBI-ProteinID: XP_012456900
UniProt: A0A0D2RF76
Position
10:765051..770858
AA seq 675 aa
MGGTLVPTATKSEPPSPPPPMESTAPSIPPPPPMPPSLMEEEPSEADIDKDVLCPICMQI
IKDAFMTACGHSFCYMCILTHLRNKSDCPCCSRYLTNNHIFPNLLLNKLLKKISARQSAR
NASPVENLRQTLLQGCEVSAKELDSLLSLLVDKKMKMEQSEAETNMQILLDFLNCLRKKK
LEELTQIQNDLQYIKEDTTAVKKRTMELYTAKERCSMNLRMLVDDFSAEKPLPSLIDQYN
NGAISGGRNSQGWIGSARSQSRVSYQANSPGFRSKDANGGSDSTCNTDSGLTVARKRRIH
AQFNDLQECYLQKRQHWTKQFNKQEDEGPAAMDVDGYNPGLQDFQAVLTTFTRYSRLRVI
AELRHGDIFHSANIVSSIEFDRDDEMFAIAGVSRRIKVFEFSAIVNEPADVHCPIVEMST
RSKLSCLSWNKYTKNHIASCDYDGIVTVWDITTRQSLMEYEEHEKRAWSVDFSRTEPSML
VSGSDDCKVKVWCTKQEASVLNIDMKANICSVKYNPGSSVHVAVGSADHRVHYYDLRNIS
KPLYVFGGHKKAVSYVKFLSNHELASASTDSTLRLWDVKENLPLRTFKGHKNEKNFVGLT
VNSEFIACGSETNEVFAYHKAISKPAASYKFGSDMAGVDEEAGSYFISAVCWKSDSPTLL
VANSQGTIKVLVLAA
NT seq 2028 nt   +upstreamnt  +downstreamnt
atgggcgggacacttgttcccaccgcaactaaatccgagccgccatcaccaccgccgccg
atggaaagcaccgcgccttctattcctcctcctcctccgatgccgccgtcattgatggag
gaagagccttctgaagctgacattgataaggatgtgctatgtccgatatgcatgcagatt
atcaaagacgcttttatgacagcttgtggtcatagcttttgttatatgtgtattttgact
catcttcgaaataagagcgattgtccttgttgttctcgttatctcactaataatcatatc
ttccctaatttattgcttaataagttattgaagaaaatctctgctcgtcaatcagcaagg
aatgcctctccggtagaaaatcttcgtcaaacattactgcagggttgtgaggtgtcagcc
aaggagctggatagtttgttgtctctacttgttgacaagaagatgaaaatggagcaaagt
gaagcagagacaaacatgcagattctgcttgatttcttgaactgtctaaggaagaaaaag
cttgaagagcttactcagattcaaaatgatcttcaatatattaaggaggacacaactgct
gtaaagaaacgtaccatggaattgtatacggcgaaagagagatgctccatgaatctaagg
atgcttgttgatgatttctctgcagaaaaacccttgccttcattgattgatcaatataat
aatggcgcaatatctggtggtcgcaactcacaaggctggataggttcagcaaggtcacag
agcagggttagttaccaagcaaattcaccgggattcagaagtaaagatgccaatggtggg
tcagattctacatgcaatactgattcaggattgactgtggcaagaaagaggcggattcat
gcacagtttaatgacctacaagagtgttacttgcaaaagcggcagcattggaccaaacaa
tttaataaacaggaagatgaaggtccagcagcaatggatgtagatggttataatcctggt
cttcaggattttcaggcagtgctaactacatttacacgatacagtcgattgagggtcatt
gctgaacttaggcatggtgatattttccactctgctaacattgtctcaagtatagaattt
gatcgtgatgatgagatgtttgctattgctggagtgtccaggcgcatcaaggtttttgag
ttttctgcgattgtgaatgaaccagcagatgtgcattgtcctattgttgaaatgtctacc
agatctaagcttagttgcttgagttggaataagtacacaaaaaaccatattgctagctgt
gattatgatgggatagtaactgtctgggacattactactcggcagagtttgatggaatat
gaggaacatgaaaagcgagcttggagtgttgatttttcacgcaccgaaccttcaatgctt
gtctctggcagtgatgactgcaaggtcaaagtttggtgcacaaagcaagaagccagtgtt
ctcaacatcgacatgaaagcaaacatttgttctgtcaagtacaatcctggatccagtgtt
catgtagcggttggttctgctgatcaccgtgttcactattatgacttgagaaacatcagc
aaaccactttatgtgtttggtgggcataagaaagctgtttcatatgtgaaattcttgtct
aaccatgaattggcttctgcttcaactgacagcacactgcgcttatgggatgtaaaagaa
aatttaccactgcgcactttcaagggtcacaaaaatgagaagaatttcgttggcctcaca
gtaaacagtgagttcattgcttgtggcagtgaaacaaatgaagtatttgcatatcacaag
gctatatctaaacctgcagcttcatataaatttggttccgacatggctggtgtcgatgag
gaagccggatcttacttcatcagtgctgtatgttggaagagcgatagcccgacactactt
gtggcaaacagtcagggaacaataaaagtgctcgtgcttgcggcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (29)   

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