KEGG   Gossypium raimondii: 105783639
Entry
105783639         CDS       T04129                                 
Name
(RefSeq) DNA polymerase delta catalytic subunit isoform X1
  KO
K02327  DNA polymerase delta subunit 1 [EC:2.7.7.7]
Organism
gra  Gossypium raimondii
Pathway
gra03030  DNA replication
gra03410  Base excision repair
gra03420  Nucleotide excision repair
gra03430  Mismatch repair
gra03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    105783639
   03410 Base excision repair
    105783639
   03420 Nucleotide excision repair
    105783639
   03430 Mismatch repair
    105783639
   03440 Homologous recombination
    105783639
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:gra03032]
    105783639
   03400 DNA repair and recombination proteins [BR:gra03400]
    105783639
Enzymes [BR:gra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     105783639
DNA replication proteins [BR:gra03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    105783639
DNA repair and recombination proteins [BR:gra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      105783639
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     105783639
SSDB
Motif
Pfam: DNA_pol_B DNA_pol_B_exo1 zf-C4pol DNA_pol_B_2 divDNApol
Other DBs
NCBI-GeneID: 105783639
NCBI-ProteinID: XP_052482726
Position
13:complement(44833955..44844189)
AA seq 1101 aa
MNKGGNPRKRPPPPSSHQPSPASKHQATTPTPPPPSTEEDFVDEDVFFDETLMGEEDVES
LILRDFEERQALASRLSKWARPPLSDAYISQSRSIVFQQLEIDYVIGESHKGLLPDSSGQ
AAIIRIFGVTGEGHSVCCLVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMKEMNRNSKV
PKFVRRIELVQKRSIMYYQQQKSQPFLKIVVALPTMVATCRGILDRGIQIDGLGMKSFIT
YESNVLFALRFMIDCNIVGGNWIEIPAGKYKKTAKNMSYCQLEFDCLYSDLISHAPEGEF
SKMAPFRILSFDIECAGRKGHFPEPSHDPVIQVANLVTLQGEDQPFIRNVMTLKSCSPIV
GVDVMSFDTEKEVLLAWREFIREVDPDIIIGYNICKFDLPYLIERAQTLGIAEFPILGRI
RNSRVRVKDTTFSSRQYGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSE
QKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMYVYNYVEMARVTGVPIS
FLLSRGQSIKVLSQLLRKSKQKNLVIPNVKQAGSEQGTFEGATVLEAKAGFYEKPIATLD
FASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNRTPSGETFVKPELQKGILPEILEE
LLAARKRAKADLKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSSVTS
YGRQMIEHTKKLVEDKFTVLGGYEHNAEVIYGDTDSVMVQFGVSDVEAAMNLGREAAEHI
SGTFTKEGEVFCNCLSRNVLHLVIIFCKKRYAGLYWTNPQKFDKMDTKGIETVRRDNCLL
VKNLVTECLHKILIDRDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAA
HVELAERMRKRDPATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLE
NQISKPLLRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLSCIGCKALICN
SDRTLCSHCKGREAELYYKTVSQVSELEELFGRLWTQCQECQGSLHQDVLCTSRDCPIFY
RRKKAQKDMVEAKRQLDRWNF
NT seq 3306 nt   +upstreamnt  +downstreamnt
atgaacaagggcggcaacccacggaagaggccaccaccgccttcttcacaccagccatct
ccggcttcgaagcaccaagcgacgactccgacgcctcccccaccgtcgacggaagaagat
ttcgtcgacgaagatgtcttctttgacgaaacccttatgggggaagaagacgtggaatcc
ctaattctacgcgacttcgaggaacgtcaagctctcgcttctcgtctttccaagtgggct
cgccctcctctctctgatgcctacatttcccagtctcgtagcattgttttccaacaattg
gagattgattatgtgattggagagagtcataaaggtttgctgcctgattcttctggtcaa
gctgccattatccgaattttcggggttactggagaaggacatagcgtttgttgtcttgtt
catggatttgagccgtatttctacattagctgccctccaggaatgggtcccgatgatatc
tcacattttcatcaaacgcttgagggtaggatgaaggagatgaacagaaacagcaaggta
ccgaagtttgttcgacgtattgaattggttcagaaaagaagtattatgtattaccagcaa
caaaagtctcaaccttttctcaagattgtagtggcattgccaacaatggttgctacctgt
cgtggcattcttgatagaggcatacaaattgatggccttggtatgaagagcttcattaca
tatgaaagcaatgttctttttgcactgcgtttcatgattgattgcaatattgttggtggt
aattggattgagataccggctggtaaatataagaagacagcaaagaatatgtcctactgc
caattggagtttgattgcttgtattcagatttgattagccatgcccctgagggggaattc
tcaaagatggctccatttcgcatattgagttttgatatagagtgtgctggtcgcaaaggt
cattttccagagccttctcatgatcctgtaatccaggtagcaaatctagttactttgcaa
ggagaagatcagccattcattcgtaatgtcatgacccttaagtcatgctccccaatagtt
ggtgttgatgtaatgtcttttgatacagaaaaagaagtcttgcttgcttggagggaattt
atccgtgaagtggaccctgatattataattggatataacatttgcaagtttgatttgcca
tatcttattgagagagcacaaacacttggaatagcagagtttccgatacttggccgcatc
aggaatagtagggttcgtgtaaaagatacaacattttcttctagacagtatggaactagg
gagagcaaagaagttactgtggaggggagagttcaatttgatttgctccaggctatgcaa
agggactacaaactaagttcttattcattgaattcagtttcagcacactttctatctgag
cagaaagaggatgttcaccattcaataatatcagatcttcagaatggaaatgctgagact
aggaggcgtcttgctgtctattgtttgaaggatgcttaccttccccaaaggcttttggat
aaactaatgtatgtttacaattatgttgagatggctcgtgtcacaggtgtgcctatatct
tttcttctttctagaggacaaagcatcaaggtactttctcaacttcttaggaagtcgaag
cagaagaaccttgttattccaaatgtcaaacaagcaggatctgaacagggaacgtttgaa
ggtgcaactgtgttggaagcgaaagcaggattctatgaaaagccaattgcaacactggat
tttgcgtctttgtatccatcaattatgatggcatataatttatgctattgcacattggtg
actcctgaagatgttcgcaaactcaacctcccaccagaatgtgttaacagaactccgtct
ggtgaaacatttgttaaaccagagctacagaaggggatacttccagaaatattggaagag
ctattagctgctcgtaaacgagcaaaagctgatttgaaggaagcaaaggatccacttgag
aaagctgttctagatggccgacagctggccttgaaggtaagtgcaaattctgtatatgga
tttacaggagctactgttggtcagttaccatgtttagagatttcttcgagtgttacaagc
tatggtcgccaaatgattgagcacaccaagaagcttgttgaagataaatttacagtgcta
ggaggctatgaacacaatgctgaggttatatatggggacacagattcggtgatggtacaa
tttggtgtgtctgatgtagaagcagcaatgaacttggggagagaagctgcagaacacatc
agtggaacttttacaaaagaaggggaagtgttctgcaactgtctgagccgtaatgtgtta
cacttggttataatattctgcaagaaaagatatgctggtttatattggacaaatccacaa
aagtttgacaaaatggacactaaaggcatcgaaactgttcgaagagacaattgtttattg
gtcaaaaaccttgtaactgaatgcctgcacaaaatactgattgatagagatattcctggt
gcagttcaatatgtcaagaataccatttcagatcttctcatgaatcggatggatttgtca
cttttggttattactaagggtctgacaaaaactggagatgattatgaggtaaaagctgct
catgttgaacttgctgaacgtatgcgcaagcgagatcctgcgactgctccaaatgttggg
gatcgggtgccttatgtcattattaaagctgcaaaaggcgccaaggcttatgagaggtca
gaggacccaatctatgtgctagaaaataacatccccatagatcctcaatattaccttgaa
aatcaaattagcaagccacttttaagaatttttgagcccattttaaagaatgctagcaag
gaacttctccatgggagtcacacaagatccatttccatatcaactccgtcaaacagtgga
ataatgaaatttgcaaagaaacaacttagttgtattggctgcaaagcgctaatttgcaat
tcagatcgaacactctgttcacactgcaagggaagagaggcagaactttattataaaaca
gtttctcaagtgtcagaacttgaggagctttttgggaggctatggacacagtgccaagag
tgtcaaggctctcttcaccaggatgtgctctgcactagtcgggattgtccaatattttac
cggagaaagaaagcacagaaagatatggtagaagccaagcggcagttggaccggtggaac
ttttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (26)   

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