KEGG   Gossypium raimondii: 105786258
Entry
105786258         CDS       T04129                                 
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1 isoform X1
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
gra  Gossypium raimondii
Pathway
gra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:gra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105786258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:gra03019]
    105786258
Enzymes [BR:gra01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     105786258
Messenger RNA biogenesis [BR:gra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105786258
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     105786258
SSDB
Motif
Pfam: Exo_endo_phos zf-C6H2 PDE12-like_N
Other DBs
NCBI-GeneID: 105786258
NCBI-ProteinID: XP_012468072
UniProt: A0A0D2QAX5
Position
1:48760447..48767097
AA seq 602 aa
MLSVLRVHLPSDIPIVGCELSPYVLLRRPDKTFTTDDVPESAPLDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG
NEEEEIFGRFNSTGAGVISASLTGSASSTSLINGSTPLYPTAVTQRSGGETWFEVGRSKT
YTPTTDDIGHVLKFECVVIDAETKLPVGHPNTLLTSRVIPAPSPSPRHLISVGGADMMGQ
LDSDGRLSSSGTFTVLSYNILSDSYASSELYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQCDHFDEFFAPELDKHGYQALYKRKTNEVYSGNIHTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTEVAVQTTQKKVALNRLVKDNVALIVVLEAKFTNQGADNPGKRQLLCVA
NTHVNVQQELKDVKIWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVD
PLHPDLLVDPLAILRPHSKLTHQLPLVSAYSAFLRGIGLGSEQQRRRMDPATNEPLFTNC
TRDFIGTLDYIFYTADSLTVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCVPKT
RH
NT seq 1809 nt   +upstreamnt  +downstreamnt
atgctgagcgtgctacgggtgcacctcccttctgatataccaattgttggctgcgagctc
tcgccttacgtgctcttacgccgaccagacaagacctttactactgatgatgtgcctgag
tccgcccctcttgatggtcacttcttgaggtacaagtggtaccgcatacaaagtgatagg
aaagttgctgtctgtagtgtacatccctctgagcaagccacgctgcagtgcctaggttgc
gtgaaggcaaagatacctgttgctaaaagttaccattgttctccaaagtgcttttcagat
gcatggcagcatcatcgagtccttcatgaccgtgccgcaagtgctgtaaacgaaaatgga
aatgaagaggaagagatatttggccgtttcaatagcactggggctggagttattagtgct
agtttaaccggttcagcatcaagcactagcttgataaatggttcaacacctctgtatcct
actgcagttacccaaaggagtggtggtgaaacctggtttgaagttggacgctctaaaaca
tataccccaactacagatgatatcggtcatgttctcaagtttgagtgtgttgtcattgat
gcagaaacgaaactacctgtcggacatcccaatactcttttgacatctcgtgttattcca
gcaccttcccctagtcctcggcacttgatctcagtaggcggagctgatatgatgggacaa
ctagattcagatggtcgtctttcatcctctggaacttttactgttctctcatacaacatt
ttgtccgactcatatgccagcagtgagttatacagttattgcccttcgtgggctctttct
tggccatatcgcagacaaaacctgttgcgggaaatcgttggttatcgtgcagacattgtt
tgtcttcaagaggtgcaatgtgaccattttgatgaattttttgctcctgagctggacaaa
catggatatcaagctttatacaagaggaagacaaatgaggtttacagtggaaatatccat
acaattgacggctgtgctacatttttccgtagagatagattttcccatgtcaaaaaatat
gaggttgaatttaataaggctgctcaatccttgactgaggttgcagttcaaactactcag
aagaaagttgctttaaatcgattggttaaggataatgttgcacttattgtggttttagaa
gcaaagtttactaatcaaggagctgacaatcctgggaagcgtcagcttctttgtgtggca
aacacacatgtaaatgttcaacaagagctaaaggatgtcaaaatctggcaggtgcatact
ctcttaaaggggttggaaaaaatagctgcaagtgcagacattccaatgttggtgtgtggg
gattttaattctgttcctggaagtgctccccattcacttcttgctatgggaaaggtggat
ccactgcatccggatttattggtcgatccacttgcaattttgcgtcctcacagcaagttg
actcatcagttgccacttgttagtgcttactcagccttcctaagaggaattggtcttggt
tcggaacaacaaagaagaaggatggacccagcaactaatgaacctttattcacaaattgc
acaagagattttatcggcaccctagattacatattttacaccgcggactctttaacggtg
gagtcattattggaactcttggatgaagatagcttaaggaaagacacagcccttccttcc
ccggagtggtcctctgatcatatagctttgttagctgaatttcgatgtgtgccgaagact
agacactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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